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sneumann / mzR

This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
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docker image for mzR #234

Closed shubham1637 closed 3 years ago

shubham1637 commented 3 years ago

Hi, Is there any docker image for installing mzR? I am trying to run mzR on HPC using singularity.

Thanks!

lgatto commented 3 years ago

Yes, the Bioconductor containers should have mzR.

jorainer commented 3 years ago

Just to expand on @lgatto's reply - the docker containers have all the required libraries to install mzR, so you'll have to create a sif image from the Bioconductor container (with singularity pull) and use the same setup as described for the bioconductor containers (i.e. bind an external directory to the singularity/docker to install all R packages there). I'm also using singularity on our clusters with that, works well.