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sneumann / mzR

This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
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GitHub actions (Ubuntu) fail with Error : invalid version specification ‘’ #264

Open sneumann opened 2 years ago

sneumann commented 2 years ago

Hi, while mac and win are fine, we get in e.g. https://github.com/sneumann/mzR/runs/5535843666?check_suite_focus=true#step:26:173

** R
** inst
** byte-compile and prepare package for lazy loading
Error : invalid version specification ‘’
Error: unable to load R code in package ‘mzR’
ERROR: lazy loading failed for package ‘mzR’

There are also further up near https://github.com/sneumann/mzR/runs/5535843666?check_suite_focus=true#step:26:20 and https://github.com/sneumann/mzR/runs/5535843666?check_suite_focus=true#step:26:162 two errors:

Error in packageVersion("Rcpp") : there is no package called ‘Rcpp’
...
Error in loadNamespace(x) : there is no package called ‘Rhdf5lib’

Despite their installation had worked: https://github.com/sneumann/mzR/runs/5535843666?check_suite_focus=true#step:15:246 and https://github.com/sneumann/mzR/runs/5535843666?check_suite_focus=true#step:15:1422

and the BioC build machines are just fine: http://bioconductor.org/checkResults/devel/bioc-LATEST/mzR/ Thoughts ? Yours, Steffen

sneumann commented 2 years ago

While https://github.com/r-lib/actions/issues/433 explains something similar, we have sessionInfo 1.2.2 in https://github.com/sneumann/mzR/runs/5535843666?check_suite_focus=true#step:20:157 that should not be affected.