findChromPeaks Error: BiocParallel errors element index: 1, 2 first error: NA/NaN/Inf in foreign function call (arg 1)

sneumann / xcms

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

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findChromPeaks Error: BiocParallel errors element index: 1, 2 first error: NA/NaN/Inf in foreign function call (arg 1) #341

Open 13479776 opened 5 years ago

13479776 commented 5 years ago

Hi, sir or madam

bp <- BiocParallel::SerialParam() register(bp, default=TRUE)

xx<- findChromPeaks(MSdat, param = paraCentWave, BPPARAM = bp, return.type = "XCMSnExp", msLevel = 1L)

Detecting mass traces at 10 ppm ... OK Detecting chromatographic peaks in 23478 regions of interest ... Error: BiocParallel errors element index: 1, 2 first error: NA/NaN/Inf in foreign function call (arg 1)

Could you please give some advices about this error ?

thanks Hees

tuhulab commented 5 years ago

I also have this problem

jorainer commented 5 years ago

Could you provide some more information, such as the output of your sessionInfo() in R?