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sneumann / xcms

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
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xcms version 3.3.1 #513

Closed michael-vermeulen closed 3 years ago

michael-vermeulen commented 3 years ago

In an attempt to replicate previous results I require xcms v3.3.1 I'm having difficulty finding this version on bioconductor and bioconda.

Is there a way I can download this version?

jorainer commented 3 years ago

The odd number in the version at position 2 (i.e. x.3.x) tells that that was a package from a developmental branch of Bioconductor. So, this version is not archived in BioC. I checked the github history and in https://github.com/sneumann/xcms/commit/ec9fa9913f98bab4320ade4f0678ce8da36dda20#diff-35ba4a2677442e210c23a00a5601aba3 the version was bumped to 3.3.2, thus, the last code base in github with the version 3.3.1 is https://github.com/sneumann/xcms/commit/7bb2a11e27efd05b758f38f07474f33fae2f35c2#diff-35ba4a2677442e210c23a00a5601aba3.

You can install that version with 

devtools::install_github("sneumann/xcms", ref = "7bb2a11e27efd05b758f38f07474f33fae2f35c2")

But be aware that you will also need other packages that match that old version (and ideally also an old version of R).

michael-vermeulen commented 3 years ago

thank you!

jorainer commented 3 years ago

Closing this issue now - feel free to reopen if needed @michael-vermeulen