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sneumann / xcms

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
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there is no package called 'MsBackendMgf' #546

Closed sneumann closed 3 years ago

sneumann commented 3 years ago

Hi, currently we have a build error on http://bioconductor.org/checkResults/devel/bioc-LATEST/xcms/malbec2-buildsrc.html due to a missing dependency:

Error: processing vignette 'xcms-lcms-ms.Rmd' failed with diagnostics:
there is no package called 'MsBackendMgf'

Despite the declaration in https://github.com/sneumann/xcms/blob/master/DESCRIPTION#L76 Yours, Steffen

jorainer commented 3 years ago

Answer from Lori:

Currently the builders do not allow the user of remotes and you would have to wait for it to be submitted to CRAN or Bioconductor. All Bioconductor dependencies must be on CRAN or Bioconductor.

So, we need to submit the MsBackendMgf package to BioC.

sneumann commented 3 years ago

... and dontrun that section of the vignette for the time being. Yours, Steffen

jorainer commented 3 years ago

I've just submitted the package - let's hope it doesn't take too long...

sneumann commented 3 years ago

With the disabled vignette parts we're back to green. Thanks Jo, yours, Steffen