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sneumann / xcms

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
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No method to convert XcmsExperiment to xcmsSet - Version 3.99.5 #696

Closed CollinStark closed 10 months ago

CollinStark commented 11 months ago

Hi, the CAMERA package (v1.57.0) requires an "xcmsSet" as an input for it's xsAnnotate method. In older xcms versions it was possible to convert the xcms preprocessing results into an "xcmsSet" with the code as(data, "xcmsSet"). Using the same code snippet in version 3.99.5 results in the following error: Error in as(data, "xcmsSet") : no method or default for coercing “XcmsExperiment” to “xcmsSet”

jorainer commented 10 months ago

closing this issue as it was implemented.