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sneumann / xcms

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
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Addition of method to filter features based on quality assessment #713

Closed philouail closed 8 months ago

philouail commented 8 months ago

Here is the implementation of the filterFeatures function with different quality assessment methods. I also wrote the method so that they can handle both XcmsResult objects and SummarisedExperiment objects.

@jorainer I have updated the PercentMissingFilter so that now it filters based on the different sample types using factor.

I tried to make the documentation comprehensive but don't hesitate to tell me if something is not clear or not explained in enough details for the users.

These different classes/methods are based on the quality assessment function from MetaboCoreUtils. So some information can also be found in this package.

Thanks in advance for the feedback !