Closed ckeeling closed 3 months ago
For which algorithm(s)? I've never worked with GC-MS data, but I would suggest to try/check the code in the xcms tutorials related to chrom peak detection maybe?
Also depends on your instrument and settings. The W4M team also has great tutorials using xcms behind the scenes https://workflow4metabolomics.org/howto, including https://download.workflow4metabolomics.org/docs/w4e2018/2018-10_EC_W4E%20-%20MSprocessing_GC-MS_processing.pdf Yours, Steffen
Thanks @sneumann, the pdf link is broken but @yguitton is now aware of this, and directed me to additional information, including metaMS and the metaRbolomics Toolbox.
Can you suggest starting parameters for GC-MS data?