snijderlab / rustyms

A rust library for parsing Pro Forma peptides and matching them against MS spectra
Apache License 2.0
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Be able to search for modifications based on placement rules #26

Closed douweschulte closed 2 weeks ago

douweschulte commented 7 months ago

Answering the question: I have a AA where I know there could be a mod, which are possible. Maybe this could also be generalised as an additional filter on a mass based search, then with a very wide tolerance you will be able to see quite a lot of modifications. The most important part is figuring out how to write down the placement rules, for that take a look at how I did it in align-cli.