Separate Peaks/raw data refine procedure

snijderlab / stitch

Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling

MIT License

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Separate Peaks/raw data refine procedure #219

Closed douweschulte closed 1 year ago

douweschulte commented 1 year ago

It would be really cool if there would be a separate procedure to refine raw data, using the I/L disambiguation, which leaves you with statistics about the peptides and disambiguation. The output should just be an extended version of the peaks csv, with extra columns with the extra info. The info should at least contain: detected sat. ions, possible max sat. ions, FDR, and all normal peaks data.

douweschulte commented 1 year ago

This is made into a subcommand. refine