Open douweschulte opened 1 year ago
I've also noticed this issue; the CDR3 of the recombined sequence generated with Stitch always seems to be much longer than the reference. And raising the CutoffScore doesn't seem to resolve the issue either.
Can you show me a picture of how your recombination looks (with the peptides visible for both sides IGHV + IGHJ) that way I can help you think if there is a way to get Stitch to recombine it better?
Here is a very nice example where a couple of problems are visible: