Allow the user to specify that on low DOC positions the germline should be taken instead of the consensus sequence. This could also be a more gray definition where the germline has a specific weight attached to it and a sufficiently high scoring option still has preference, but that is left for implementation time.
Allow the user to specify that on low DOC positions the germline should be taken instead of the consensus sequence. This could also be a more gray definition where the germline has a specific weight attached to it and a sufficiently high scoring option still has preference, but that is left for implementation time.