Non-ontology-separated layout too cramped?

[KonradHoeffner]

Especially the circle around entity type is too cramped.

See commit https://github.com/IMISE/snik-cytoscape.js/commit/8939a6594f0a4860fc5b8a55e0fd8fb8997f7f91, on how to change the layout parameters.

[KonradHoeffner]

The problem seems to be CPU dependent, in that a slow machine can't calculate enough layout cycles in the time limit. A Intel Pentium G2030 @3.00GHz is too slow, while an i7-4790 @ 3.6GHz seems to do fine. Change the time limit to a cycle limit.

[KonradHoeffner]

On the i7-4790, the following values look great, however they take the full 40 seconds:

export const euler =
{
  /*eslint no-unused-vars: "off"*/
  name: "euler",
  springLength: edge => edge.data("springLength")?edge.data("springLength"):800,
  animate: true,
  refresh: 50,
  maxSimulationTime: 40000,
  maxIterations: 1000,
  timeStep: 40,
  randomize: true,
  movementThreshold: 1,
  fit:true,
  mass: node => node.data("mass")?node.data("mass"):40,
};

The timestep was changed from the default (20?) to 40, the max simulation time to 40s and the max iterations to 1000.

See also https://github.com/cytoscape/cytoscape.js-euler

[KonradHoeffner]

500 iterations with a timestep of 80 looks good as well and takes 27 seconds on the i7-4790.

On the G2030 it takes 50 second to start SNIK Graph and calculate the layout but at least it looks good now.