snikumbh / seqArchR

seqArchR: Identifying (promoter) sequence architectures de novo using NMF
https://snikumbh.github.io/seqArchR
GNU General Public License v3.0
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BiocParallel error #2

Open parsboy66 opened 1 year ago

parsboy66 commented 1 year ago

thanks for nice tool, i would be happy to get any helps regarding to BiocParallel error , I installed and ran everything according to the instruction based on the Vignettes, it comes with this error:

BiocParallel errors 1 remote errors, element index: 1 0 unevaluated and other errors first remote error: Error:

Thanks Iman

snikumbh commented 1 year ago

Hi @parsboy66 Apologies for the delay in replying.

Have you checked if the Python dependency scikit-learn is also installed and available?

Alternatively, you could try to run seqArchR serially first (n_cores = 0) to iron out any errors, and then try running it in parallel.