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snoweye / pbdZMQ

Interface to ZeroMQ
GNU General Public License v3.0
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pbdZMQ issue while installing IRkernel #31

Closed yourinoelnelson closed 7 years ago

yourinoelnelson commented 8 years ago

I have had a few issues installing IRkernel on Ubuntu but this one I can't seem to get passed. It seems to get hung up on 'libzmq_la-curve_client.lo' not sure how to fix it though.

Makefile:728: recipe for target 'libzmq_la-curve_client.lo' failed

Any suggestions? See the full log below.

* installing *source* package ‘pbdZMQ’ ...
** package ‘pbdZMQ’ successfully unpacked and MD5 sums checked
checking for pkg-config... no

****************** Results of pbdZMQ package configure *****************

>> GET_PKG_CONFIG = no
>> GET_SYSTEM_ZMQ = no
>> PKG_CONFIG =
>> SYSTEM_ZMQ_INCLUDEDIR =
>> SYSTEM_ZMQ_LIBDIR =
>> ENABLE_INTERNAL_ZMQ = no
>> INTERNAL_ZMQ_INCLUDEDIR = ./zmqsrc/include
>> INTERNAL_ZMQ_LIBDIR = ./
>> EXTERNAL_ZMQ_INCLUDE =
>> EXTERNAL_ZMQ_LDFLAGS =
>> ZMQ_INCLUDE = -I./zmqsrc/include
>> ZMQ_LDFLAGS = -L./ -lzmq
>> EXT_LIBS = $(R_ZMQ)
>> ZMQ_POLLER = select

************************************************************************

configure: creating ./config.status
config.status: creating src/Makevars
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/build_zmq
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/build_zmq
config.status: creating R/zzz.r
** libs
( sh ./chmod_zmq.inc; cd zmqsrc; sh ../build_zmq )
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for gcc option to accept ISO C99... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking whether gcc and cc understand -c and -o together... yes
checking for a sed that does not truncate output... /bin/sed
checking for gawk... (cached) gawk
checking for xmlto... no
checking for asciidoc... no
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... dlltool
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
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checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
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checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether the C compiler works... yes
checking whether we are using Intel C compiler... no
checking whether we are using Sun Studio C compiler... no
checking whether we are using clang C compiler... no
checking whether we are using gcc >= 4 C compiler... yes
checking whether the C++ compiler works... yes
checking whether we are using Intel C++ compiler... no
checking whether we are using Sun Studio C++ compiler... no
checking whether we are using clang C++ compiler... no
checking whether we are using gcc >= 4 C++ compiler... yes
checking whether to enable debugging information... no
checking whether to enable code coverage... no
checking if TIPC is available and supports nonblocking connect... no
checking for pthread_create in -lpthread... yes
checking for clock_gettime in -lrt... yes
checking for sodium_init in -lsodium... yes
checking for gss_init_sec_context in -lgssapi_krb5... no
configure: WARNING: libgssapi_krb5 is needed for GSSAPI security
checking whether C++ compiler supports -fvisibility=hidden... yes
checking whether C++ compiler supports dso visibility... yes
checking whether to build documentation... no
checking whether to install manpages... no
checking for suitable polling system skipped for preselect... using select
checking for ANSI C header files... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
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checking arpa/inet.h usability... yes
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checking netinet/tcp.h usability... yes
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checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
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checking sys/time.h usability... yes
checking sys/time.h presence... yes
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checking time.h usability... yes
checking time.h presence... yes
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checking for unistd.h... (cached) yes
checking limits.h usability... yes
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checking sys/eventfd.h usability... yes
checking sys/eventfd.h presence... yes
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checking whether SO_PEERCRED is declared... yes
checking whether LOCAL_PEERCRED is declared... no
checking for stdbool.h that conforms to C99... yes
checking for _Bool... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking for ssize_t... yes
checking whether time.h and sys/time.h may both be included... yes
checking for uint32_t... yes
checking for working volatile... yes
checking "with_norm_ext = no"... checking how to enable additional warnings for C++ compiler... -Wall
checking how to turn warnings to errors in C++ compiler... -Werror
checking how to enable strict standards compliance in C++ compiler... -pedantic
checking return type of signal handlers... void
checking for perror... yes
checking for gettimeofday... yes
checking for clock_gettime... yes
checking for memset... yes
checking for socket... yes
checking for getifaddrs... yes
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checking for fork... yes
checking alloca.h usability... yes
checking alloca.h presence... yes
checking for alloca.h... yes
checking whether SOCK_CLOEXEC is supported... yes
checking whether SO_KEEPALIVE is supported... yes
checking whether TCP_KEEPCNT is supported... yes
checking whether TCP_KEEPIDLE is supported... yes
checking whether TCP_KEEPINTVL is supported... yes
checking whether TCP_KEEPALIVE is supported... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/libzmq.pc
config.status: creating src/platform.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
make[1]: Entering directory '/tmp/RtmprVV3kl/R.INSTALL79d33418958/pbdZMQ/src/zmqsrc/src'
make  all-am
make[2]: Entering directory '/tmp/RtmprVV3kl/R.INSTALL79d33418958/pbdZMQ/src/zmqsrc/src'
  CXX    libzmq_la-address.lo
  CXX    libzmq_la-clock.lo
  CXX    libzmq_la-ctx.lo
  CXX    libzmq_la-curve_client.lo
curve_client.cpp: In constructor 'zmq::curve_client_t::curve_client_t(const zmq::options_t&)':
curve_client.cpp:51:18: error: ignoring return value of 'int sodium_init()', declared with attribute warn_unused_result [-Werror=unused-result]
     sodium_init();
                  ^
cc1plus: all warnings being treated as errors
Makefile:728: recipe for target 'libzmq_la-curve_client.lo' failed
make[2]: *** [libzmq_la-curve_client.lo] Error 1
make[2]: Leaving directory '/tmp/RtmprVV3kl/R.INSTALL79d33418958/pbdZMQ/src/zmqsrc/src'
Makefile:515: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory '/tmp/RtmprVV3kl/R.INSTALL79d33418958/pbdZMQ/src/zmqsrc/src'
make[1]: Entering directory '/tmp/RtmprVV3kl/R.INSTALL79d33418958/pbdZMQ/src/zmqsrc/src'
  CXX    libzmq_la-curve_client.lo
curve_client.cpp: In constructor 'zmq::curve_client_t::curve_client_t(const zmq::options_t&)':
curve_client.cpp:51:18: error: ignoring return value of 'int sodium_init()', declared with attribute warn_unused_result [-Werror=unused-result]
     sodium_init();
                  ^
cc1plus: all warnings being treated as errors
Makefile:728: recipe for target 'libzmq_la-curve_client.lo' failed
make[1]: *** [libzmq_la-curve_client.lo] Error 1
make[1]: Leaving directory '/tmp/RtmprVV3kl/R.INSTALL79d33418958/pbdZMQ/src/zmqsrc/src'
Makevars:45: recipe for target 'libzmq' failed
make: *** [libzmq] Error 2
ERROR: compilation failed for package ‘pbdZMQ’
* removing ‘/opt/miniconda3/lib/R/library/pbdZMQ’
wrathematics commented 8 years ago

I'm not sure why the internal zmq build is failing, but a possible solution would be to first install zeromq on your system via

sudo apt-get install libzmq3-dev

and then try to rebuild pbdZMQ

snoweye commented 7 years ago

Fix. See details at https://groups.google.com/forum/#!topic/rbigdataprogramming/O873PpUP-LQ .