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snugel / cas-offinder

An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
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conda-installed cas-offinder doesn't find GPU #26

Closed JoeEmendo closed 5 years ago

JoeEmendo commented 5 years ago

cas-offinder installed via conda running on AWS p3.2xlarge instance can't "see" the GPUs (when running with arg "G" doesn't work and receive error "No OpenCL devices found", but arg "C" works fine). When installed from source not in a conda environment it works fine with arg "G". It could be an issue of opencl, or of conda, but I wanted to let you know.

Thanks for the great program!

dandaman commented 5 years ago

I also encounter this issue - as soon as you move/execute it from a location outside the anaconda path it works (same binary).

pjb7687 commented 5 years ago

We are not managing the conda package, please contact the package maintainer.