Mark bulge gap with `_` to avoid colliding with strand/direction `-`

snugel / cas-offinder

An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.

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Closed richardkmichael closed 3 years ago

richardkmichael commented 3 years ago

Makes post-processing slightly easier, especially for people unfamiliar with grep and/or regular expressions.

pjb7687 commented 3 years ago

Hi, I believe presenting gaps as dashes is the most common practice for many aligners. e.g. BLAT/BLAST, ClustalW, etc. Sorry!

richardkmichael commented 3 years ago

Ok, I did not know that; definitely better to be consistent with other tools, no problem!