data viz - Githubissues

snystrom / memes

An R interface to the MEME Suite

https://snystrom.github.io/memes/

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data viz #54

Open snystrom opened 3 years ago

snystrom commented 3 years ago

[ ] visualization for occurance along linear feature (ex indicating position of motifs along multiple proteins)
- using relative position to start site coords (ie 1 -> N)

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snystrom commented 3 years ago

Note, that GRanges and get_sequence can be used for non-DNA sequences. In particular, in FIMO if each sequence name is a different gene, RNA, protein, etc. And setting parse_genomic_coords = FALSE, you have an easy representation of seqnames = feature & coords = location of match.