error runinng runTomTom

snystrom / memes

An R interface to the MEME Suite

https://snystrom.github.io/memes/

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error runinng runTomTom #99

Closed whywhowhat closed 2 years ago

whywhowhat commented 2 years ago

Even for running example code of runTomTom(), causing following error : Error: 'update_motifs' is not an exported object from 'namespace:universalmotif'

Is there any specific or suitable version for using runTomTom() and universalmotif package?
In the end, planning to run list of degenerated consensus for motif comparison.

snystrom commented 2 years ago

What version of universalmotif are you using? It should be >= 1.9.3 to support those features.

snystrom commented 2 years ago

Can you post the output of sessionInfo()? Did you install memes from Bioconductor with BiocManager::install("memes")?

whywhowhat commented 2 years ago

I just found out, my R version should be updated and also universalmotif

whywhowhat commented 2 years ago

It works now! thank you for your time and feedback!

snystrom commented 2 years ago

Glad that was the fix! Good luck with your analysis!