Wrong include path while building netcdf4-python

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I am trying to build the package with the attached setup.cfg configuration but 
the build process fails due to the wrong include path passed to gcc by 
setup.py. Below is the first few lines of output of the build process:

reading from setup.cfg...
using nc-config ...
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler 
options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler 
options
running build_src
build_src
building py_modules sources
building extension "netCDF4" sources
build_src: building npy-pkg config files
running build_py
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'netCDF4' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall 
-Wstrict-prototypes -m64 -fPIC

compile options: '-I/usr/local/netcdf-4.1.3_ifort/include 
-I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c'

However, the "-I" flag should read "/usr/local/netcdf-4.1.3/include" in line 
that starts with "compile options:".

Any help will be appreciated.

Regards,

Ekin

Original issue reported on code.google.com by ekinako...@gmail.com on 20 Jun 2012 at 8:24

Attachments:

• setup.cfg

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Original comment by whitaker.jeffrey@gmail.com on 26 Feb 2014 at 2:04

• Changed state: Fixed