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soedinglab
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BaMM_webserver
Webserver for motif discovery with higher-order Bayesian Markov Models (BaMMs)
https://bammmotif.mpibpc.mpg.de
GNU Affero General Public License v3.0
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The reported position of identified motif in the occurrence file does not seem to be accurate
#150
yasamanrezvani
opened
1 year ago
2
handle improper accesses to /redirect_genome_browser gracefully
#149
croth1
opened
4 years ago
0
[34036299] meme parser does not tolerate new line between motif definition and PWM
#148
croth1
opened
4 years ago
0
Fix crashes
#147
croth1
closed
4 years ago
0
no error when plotting motif distributions with too few hits
#146
croth1
closed
5 years ago
0
[d84afd11]: need at least 2 points to select a bandwidth automatically
#145
croth1
closed
5 years ago
0
bugfix: bammscan fasta file validation
#144
croth1
closed
5 years ago
0
Server maintainance
#143
croth1
closed
5 years ago
0
[51e10f56] Error in if (strand_ind[i] == "+") {
#142
croth1
closed
5 years ago
1
Add privacy policies
#141
croth1
closed
5 years ago
0
improved docs
#140
croth1
closed
5 years ago
0
BaMMScan allow searching sequences against a full database.
#139
croth1
opened
6 years ago
0
make it clearer that uploaded files have to be raw text files
#138
croth1
opened
6 years ago
0
add textfield for sequence input
#137
croth1
opened
6 years ago
0
docs: added ModERN database
#136
croth1
closed
6 years ago
0
small bugfixes in submodules
#135
croth1
closed
6 years ago
0
[1b847ab3] unbound variable in pwm2bamm
#134
croth1
closed
6 years ago
0
updated django & cleaned up dependencies
#133
croth1
closed
6 years ago
0
add Drosophila database to our BaMM database
#132
wge11
closed
6 years ago
4
export BaMMmatch results into a tsv/csv table file
#131
wge11
opened
6 years ago
0
[62f6484c] bug in plotMotifDistribution.R
#130
wge11
closed
6 years ago
1
[13809025] error in shoot-peng motif evaluation
#129
croth1
closed
6 years ago
1
[a5029173] bug in plotMotifDistribution.R
#128
wge11
closed
6 years ago
1
fixed memory problem in fdr calculation
#127
croth1
closed
6 years ago
0
docker: update alpine to 3.8
#126
croth1
closed
6 years ago
0
[f921038f] problem evaluating seeds
#125
croth1
closed
6 years ago
5
added DOIs to all references
#124
croth1
closed
6 years ago
0
test: verify that invalid uuids now produce a 404 error
#123
croth1
closed
6 years ago
0
bug: non-uuid inputs as job ids now consistently generate 404 errors
#122
croth1
closed
6 years ago
0
Various small bug fixes for 1.2.2
#121
croth1
closed
6 years ago
0
Result page does not show images when FDR is not run
#120
croth1
closed
6 years ago
1
'utf-8' codec can't decode byte 0xd2 in position 16: invalid continuation byte
#119
croth1
closed
6 years ago
0
fix calculation of probabilities in the left flanking region of the model
#118
wge11
closed
6 years ago
1
bug: manual refine now runs bammscan for all motifs
#117
croth1
closed
6 years ago
0
Improvement round
#116
croth1
closed
6 years ago
0
Fix BaMMscan crash due to changes in --basename argument interpretation
#115
croth1
closed
6 years ago
0
[edd271f9]: non-existing file error
#114
croth1
closed
6 years ago
2
Server does not stop updating when job crashes
#113
wge11
closed
6 years ago
2
[19530c7c] Error in plotBaMMLogo.R code
#112
wge11
closed
6 years ago
2
[9dd888d1] error in plotPvalStats.R
#111
croth1
closed
6 years ago
1
bug: error status not captured properly
#110
croth1
closed
6 years ago
0
updated bamm dependency
#109
croth1
closed
6 years ago
0
updated peng submodule
#108
croth1
closed
6 years ago
0
bug: fix broken links on my_results page
#107
croth1
closed
6 years ago
0
updated suite after fixing an MMcompare problem.
#106
croth1
closed
6 years ago
0
[42c5d4b7] crash in MMcompare script
#105
croth1
closed
6 years ago
2
improvements to backup logging
#104
croth1
closed
6 years ago
0
adds configuration option to set tmp dir
#103
croth1
closed
6 years ago
0
improves page to recently submitted jobs
#102
croth1
closed
6 years ago
0
bamm result page now ranks motifs properly
#101
croth1
closed
6 years ago
0
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