ERROR: ERROR: Not enough memory to allocate variables!

[sirenfrappe]

when the sequence's length is larger than 2K, I got this error : ERROR: ERROR: Not enough memory to allocate variables!. I try to run it on other clusters which have bigger memory and remove some rows of the alignments file ,and doesnt work.

 ./CCMpred/bin/ccmpred  -t 28 ./TLN2_HUMAN.aln ./TLN2_HUMAN.ccmpred
 _____ _____ _____               _
|     |     |     |___ ___ ___ _| |
|   --|   --| | | | . |  _| -_| . |
|_____|_____|_|_|_|  _|_| |___|___|
                  |_|

using CPU (28 thread(s))

ERROR: ERROR: Not enough memory to allocate variables!

TLN2_HUMAN,aln has 21327 rows ,and the sequence's length is 2224.

[croth1]

related to: https://github.com/soedinglab/CCMpred/issues/17. Unfortunately, there is nobody developing CCMpred anymore, so the support I can provide is very limited.