search

soedinglab / CCMpred

Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
http://www.ncbi.nlm.nih.gov/pubmed/25064567
GNU Affero General Public License v3.0
107 stars 25 forks source link

CUDA error No. 0 #32

Open miss77jun opened 3 years ago

miss77jun commented 3 years ago

Hi, when I used ccmpred with large input 'aln' file, ccmpred crashed with error as follows. Any solutions for this problem? Thanks very much.

Found 1 CUDA devices, using device #0: Tesla V100-SXM2-32GB
Total GPU RAM:     34,089,730,048
Free GPU RAM:      33,757,265,920
Needed GPU RAM:    16,760,383,404 �~\~S
Reweighted 99437 sequences with threshold 0.8 to Beff=5613.23 weight mean=0.0564501, min=0.000219491, max=1

Will optimize 257425216 32-bit variables

iter    eval    f(x)            �~U~Qx�~U~Q             �~U~Qg�~U~Q             step
CUDA error No. 0 in $CCMpred/src/evaluate_cuda_kernels.cu at line 589
jhschwartz commented 2 years ago

I know this is very old, but if by any chance you recall, how large was your .aln file? Larger than 1787 in width? I'm trying to solve #34 and I'm wondering if you faced the same issue, and also, if you found a solution.