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soedinglab / MMseqs2-App

MMseqs2 app to run on your workstation or servers
https://search.foldseek.com
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Problems with nucleotide searches: API responds with 400 #8

Closed josemduarte closed 4 years ago

josemduarte commented 4 years ago

This is a follow up to my comment on #3

Issue: when executing query against DNA/RNA database, the API call to endpoint api/result/LwDKtIlhXr4oSa7w-zTpgwxHMXikC-FInHXmvg/ returns a 400 and a message like:

record on line 3: wrong number of fields

This is the debugging output as requested by @milot-mirdita :

# head jobs/LwDKtIlhXr4oSa7w-zTpgwxHMXikC-FInHXmvg/alis_*
==> jobs/LwDKtIlhXr4oSa7w-zTpgwxHMXikC-FInHXmvg/alis_pdb_rna_sequence <==
unnamed 3J6B_1  1.000   1894    0   0   1   1894    3533    5426    0.000E+00   3395    1894    3296    CAUCUAAGUAACUUAAGGAUAAGAAAUCAACAGAGAUAUUAUGAGUAUUGGUGAGAGAAAAUAAUAAAGGUCUAAUAAGUAUUAUGUGAAAAAAAUGUAAGAAAAUAGGAUAACAAAUUCUAAGACUAAAUACUAUUAAUAAGUAUAGUAAGUACCGUAAGGGAAAGUAUGAAAAUGAUUAUUUUAUAAGCAAUCAUGAAUAUAUUAUAUUAUAUUAAUGAUGUACCUUUUGUAUAAUGGGUCAGCAAGUAAUUAAUAUUAGUAAAACAAUAAGUUAUAAAUAAAUAGAAUAAUAUAUAUAUAUAAAAAAAUAUAUUAAAAUAUUUAAUUAAUAUUAAUUGACCCGAAAGCAAACGAUCUAACUAUGAUAAGAUGGAUAAACGAUCGAACAGGUUGAUGUUGCAAUAUCAUCUGAUUAAUUGUGGUUAGUAGUGAAAGACAAAUCUGGUUUGCAGAUAGCUGGUUUUCUAUGAAAUAUAUGUAAGUAUAGCCUUUAUAAAUAAUAAUUAUUAUAUAAUAUUAUAUUAAUAUUAUAUAAAGAAUGGUACAGCAAUUAAUAUAUAUUAGGGAACUAUUAAAGUUUUAUUAAUAAUAUUAAAUCUCGAAAUAUUUAAUUAUAUAUAAUAAAGAGUCAGAUUAUGUGCGAUAAGGUAAAUAAUCUAAAGGGAAACAGCCCAGAUUAAGAUAUAAAGUUCCUAAUAAAUAAUAAGUGAAAUAAAUAUUAAAAUAUUAUAAUAUAAUCAGUUAAUGGGUUUGACAAUAACCAUUUUUUAAUGAACAUGUAACAAUGCACUGAUUUAUAAUAAAUAAAAAAAAAUAAUAUUUAAAAUCAAAUAUAUAUAUAUUUGUUAAUAGAUAAUAUACGGAUCUUAAUAAUAAGAAUUAUUUAAUUCCUAAUAUGGAAUAUUAUAUUUUUAUAAUAAAAAUAUAAAUACUGAAUAUCUAAAUAUUAUUAUUACUUUUUUUUUAAUAAUAAUAAUAUGGUAAUAGAACAUUUAAUGAUAAUAUAUAUUAGUUAUUAAUUAAUAUAUGUAUUAAUUAAAUAGAGAAUGCUGACAUGAGUAACGAAAAAAAGGUAUAAACCUUUUCACCUAAAACAUAAGGUUUAACUAUAAAAGUACGGCCCCUAAUUAAAUUAAUAAGAAUAUAAAUAUAUUUAAGAUGGGAUAAUCUAUAUUAAUAAAAAUUUAUCUUAAAAUAUAUAUAUUAUUAAUAAUUAUAUUAAUUAAUUAAUAAUAUAUAUAAUUAUAUUAUAUAUUAUAUAUUUUUUAUAUAAUAUAAACUAAUAAAGAUCAGGAAAUAAUUAAUGUAUACCGUAAUGUAGACCGACUCAGGUAUGUAAGUAGAGAAUAUGAAGGUGAAUUAGAUAAUUAAAGGGAAGGAACUCGGCAAAGAUAGCUCAUAAGUUAGUCAAUAAAGAGUAAUAAGAACAAAGUUGUACAACUGUUUACUAAAAACACCGCACUUUGCAGAAACGAUAAGUUUAAGUAUAAGGUGUGAACUCUGCUCCAUGCUUAAUAUAUAAAUAAAAUUAUUUAACGAUAAUUUAAUUAAAUUUAGGUAAAUAGCAGCCUUAUUAUGAGGGUUAUAAUGUAGCGAAAUUCCUUGGCCUAUAAUUGAGGUCCCGCAUGAAUGACGUAAUGAUACAACAACUGUCUCCCCUUUAAGCUAAGUGAAAUUGAAAUCGUAGUGAAGAUGCUAUGUACCUUCAGCAAGACGGAAAGACCCUAUGCAGCUUUACUGUAAUUAGAUAGAUCGAAUUAUUGUUUAUUAUAUUCAGCAUAUUAAGUAAUCCUAUUAUUAGGUAAUCGUUUAGAUAUUAAUGAGAUACUUAUUAUAAUAUAAUGAUAAUUCUAAUCUUAUAAAUAAUUAUUAUUAUUAUUAUUAAUAAUAA  ACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAGAAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGAAUCCCCGCCCCGCGGCGGGGCGCGGGACAUGUGGCGUACGGAAGACCCGCUCCCCGGCGCCGCUCGUGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCGGUAGCGGCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCAGCCCAAAGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACAAGUACCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAACCGUUAAGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGCGGGUCCGGCCGUGUCGGCGGCCCGGCGGAUCUUUCCCGCGCGGGGGACCGUCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCGGGACGGCUGGGAAGGCCCGGCGGGGAAGGUGGCUCGGCCGAGUGUUACAGCCCCCCCGGCAGCAGCACUCGCCGAAUCCCGGGGCCGAGGGAGCGAGACCCGUCGCCGCGCUCUCCCCCCUCCCGGCGCCGCCGGGGGGGGCCGGGCCACCCCUCCCACGGCGCGACCGCUCGGGGCGGACUGUCCCCAGUGCGCCCCGGGCGGGUCGCGCCGUCGGGCCCGGGGGAGGGGCCACGCGCGCGUCCCCCGAAGAGGGGGACGGCGGAGCGAGCGCACGGGGUCGGCGGCGACGUCGGCUACCCACCCGACCCGUCUUGAAACACGGACCAAGGAGUCUAACACGUGCGCGAGUCGGGGGCUCGCACGAAAGCCGCCGUGGCGCAAUGAAGGUGAAGGCCGGCGCGCUCGCCGGCCGAGGUGGGAUCCCGAGGCCUCUCCAGUCCGCCGAGGGCGCACCACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCACGAGCGCACGUGUUAGGACCCGAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGGUCGUCCGACCUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUAGCUGGCGCUCUCGCACACGCAGUUUUAUCCGGUAAAGCGAAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUCUCAAACUUUAAAUGGGUAAGAAGCCCGGCUCGCUGGCGUGGAGCCGGGCGUGGAAUGCGAGUGCCUAGUGGGCCACUUUUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGGUUAAGGCGCCCGAUGCCGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCUGAAAAUGGAUGGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGCCGGCAGUCGAGAGUGGACGGGAGCGGCGGGGGCGGCGCGCGCGCGCGCCCGCCCCCGGAGCCCCGCGGACGCUACGCCGCGACGAGUAGGAGGGCCGCUGCGGUGAGCCUUGAAGCCUAGGGCGCGGGCCCGGGUGGAGCCGCCGCAGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAACGAGAACUUUGAAGGCCGAAGUGGAGAAGGGUUCCAUGUGAACAGCAGUUGAACAUG
unnamed 5MRC_1  0.999   1894    2   0   1   1894    3533    5426    0.000E+00   3390    1894    3296    CAUCUAAGUAACUUAAGGAUAAGAAAUCAACAGAGAUAUUAUGAGUAUUGGUGAGAGAAAAUAAUAAAGGUCUAAUAAGUAUUAUGUGAAAAAAAUGUAAGAAAAUAGGAUAACAAAUUCUAAGACUAAAUACUAUUAAUAAGUAUAGUAAGUACCGUAAGGGAAAGUAUGAAAAUGAUUAUUUUAUAAGCAAUCAUGAAUAUAUUAUAUUAUAUUAAUGAUGUACCUUUUGUAUAAUGGGUCAGCAAGUAAUUAAUAUUAGUAAAACAAUAAGUUAUAAAUAAAUAGAAUAAUAUAUAUAUAUAAAAAAAUAUAUUAAAAUAUUUAAUUAAUAUUAAUUGACCCGAAAGCAAACGAUCUAACUAUGAUAAGAUGGAUAAACGAUCGAACAGGUUGAUGUUGCAAUAUCAUCUGAUUAAUUGUGGUUAGUAGUGAAAGACAAAUCUGGUUUGCAGAUAGCUGGUUUUCUAUGAAAUAUAUGUAAGUAUAGCCUUUAUAAAUAAUAAUUAUUAUAUAAUAUUAUAUUAAUAUUAUAUAAAGAAUGGUACAGCAAUUAAUAUAUAUUAGGGAACUAUUAAAGUUUUAUUAAUAAUAUUAAAUCUCGAAAUAUUUAAUUAUAUAUAAUAAAGAGUCAGAUUAUGUGCGAUAAGGUAAAUAAUCUAAAGGGAAACAGCCCAGAUUAAGAUAUAAAGUUCCUAAUAAAUAAUAAGUGAAAUAAAUAUUAAAAUAUUAUAAUAUAAUCAGUUAAUGGGUUUGACAAUAACCAUUUUUUAAUGAACAUGUAACAAUGCACUGAUUUAUAAUAAAUAAAAAAAAAUAAUAUUUAAAAUCAAAUAUAUAUAUAUUUGUUAAUAGAUAAUAUACGGAUCUUAAUAAUAAGAAUUAUUUAAUUCCUAAUAUGGAAUAUUAUAUUUUUAUAAUAAAAAUAUAAAUACUGAAUAUCUAAAUAUUAUUAUUACUUUUUUUUUAAUAAUAAUAAUAUGGUAAUAGAACAUUUAAUGAUAAUAUAUAUUAGUUAUUAAUUAAUAUAUGUAUUAAUUAAAUAGAGAAUGCUGACAUGAGUAACGAAAAAAAGGUAUAAACCUUUUCACCUAAAACAUAAGGUUUAACUAUAAAAGUACGGCCCCUAAUUAAAUUAAUAAGAAUAUAAAUAUAUUUAAGAUGGGAUAAUCUAUAUUAAUAAAAAUUUAUCUUAAAAUAUAUAUAUUAUUAAUAAUUAUAUUAAUUAAUUAAUAAUAUAUAUAAUUAUAUUAUAUAUUAUAUAUUUUUUAUAUAAUAUAAACUAAUAAAGAUCAGGAAAUAAUUAAUGUAUACCGUAAUGUAGACCGACUCAGGUAUGUAAGUAGAGAAUAUGAAGGUGAAUUAGAUAAUUAAAGGGAAGGAACUCGGCAAAGAUAGCUCAUAAGUUAGUCAAUAAAGAGUAAUAAGAACAAAGUUGUACAACUGUUUACUAAAAACACCGCACUUUGCAGAAACGAUAAGUUUAAGUAUAAGGUGUGAACUCUGCUCCAUGCUUAAUAUAUAAAUAAAAUUAUUUAACGAUAAUUUAAUUAAAUUUAGGUAAAUAGCAGCCUUAUUAUGAGGGUUAUAAUGUAGCGAAAUUCCUUGGCCUAUAAUUGAGGUCCCGCAUGAAUGACGUAAUGAUACAACAACUGUCUCCCCUUUAAGCUAAGUGAAAUUGAAAUCGUAGUGAAGAUGCUAUGUACCUUCAGCAAGACGGAAAGACCCUAUGCAGCUUUACUGUAAUUAGAUAGAUCGAAUUAUUGUUUAUUAUAUUCAGCAUAUUAAGUAAUCCUAUUAUUAGGUAAUCGUUUAGAUAUUAAUGAGAUACUUAUUAUAAUAUAAUGAUAAUUCUAAUCUUAUAAAUAAUUAUUAUUAUUAUUAUUAAUAAUAA  ACGCGCCAGCGCCGAUGGUACUGGGCGGGCGACCGCCUGGGAGAGUAGGUCGGUGCGGGGGA
AAGCAGCUUUACAGAUCAAUGGCGGAGGGAGGUCAACAUCAAGAACUGUGGGCCUUUUAUUGCCUAUAGAACUUAUAACGAACAUGGUUCUUGCCUUUUACCAGAACCAUCCGGGUGUUGUCUCCAUAGAAACAGGUAAAGCUGUCCGUUACUGUGGGCUUGCCAUAUUUUUUGGAACUUUUCUGCCCUUUUUCUCAAUGAGUAAGGAGGGCGU
GGGCUGAAGGAUGGAGACGUCUAGGCCC
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAAAAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGAAUCCCCGCCCCGCGGGGCGCGGGACAUGUGGCGUACGGAAGACCCGCUCCCCGGCGCCGCUCGUGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCGGUAGCGGCCCCCGGCGCGCGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCAGCCCAAAGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACAAGUACCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAACCGUUAAGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGCGGGUCCGGCCGUGUCGGCGGCCCGGCGGAUCUUUCCCGCCCCCGGGGUCGGCGGGGGACCGUCCCCCGGACCGGCGACCGGCCGCCGCCGGGCGCAUUUCCAGGCGGUGCGCCGCGACCGGCUCCGGGACGGCUGGGAAGGCCCGGCGGGGAAGGUGGCUCGGGGCCCCCGAGUGUUACAGCCCCCCCGGCAGCAGCACUCGCCGAAUCCCGGGGCCGAGGGAGCGAGACCCGUCGCCGCGCUCUCCCCCCUGGGGGGGCCGGGCCACCCCUCCCACGGCGCGACCGCUCUCCCAGGGGGCGGGGCGGACUGUCCCCAGUGCGCCCCGGGCGGGUCGCGCCGUCGGGCCCGGGGGGCCACGCGCGCGUCCCGGGACGGCGGAGCGAGCGCACGGGGUCGGCGGCGACGUCGGCUACCCACCCGACCCGUCUUGAAACACGGACCAAGGAGUCUAACACGUGCGCGAGUCGGGGGCUCGCACGAAAGCCGCCGUGGCGCAAUGAAGGUGAAGGCCGGCGCGCUCGCCGGCCGAGGUGGGAUCCCGAGGCCUCUCCAGUCCGCCGAGGGGCACCACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCACGAGCGCACGUGUUAGGACCCGAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGGUCGUCCGACCUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUAGCUGGCGCUCUCGCCCACGCAGUUUUAUCCGGUAAAGCGAAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUCUCAAACUUUAAAUGGGUAAGAAGCCCGGCUCGCUGGCGUGGAGCCGGGGUGGAAUGCGAGUGCCUAGUGGGCCACUUUUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGGUUAAGGCGCCCGAUGCCGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCAC
unnamed 5MRF_1  0.999   1894    2   0   1   1894    3533    5426    0.000E+00   3390    1894    3296    CAUCUAAGUAACUUAAGGAUAAGAAAUCAACAGAGAUAUUAUGAGUAUUGGUGAGAGAAAAUAAUAAAGGUCUAAUAAGUAUUAUGUGAAAAAAAUGUAAGAAAAUAGGAUAACAAAUUCUAAGACUAAAUACUAUUAAUAAGUAUAGUAAGUACCGUAAGGGAAAGUAUGAAAAUGAUUAUUUUAUAAGCAAUCAUGAAUAUAUUAUAUUAUAUUAAUGAUGUACCUUUUGUAUAAUGGGUCAGCAAGUAAUUAAUAUUAGUAAAACAAUAAGUUAUAAAUAAAUAGAAUAAUAUAUAUAUAUAAAAAAAUAUAUUAAAAUAUUUAAUUAAUAUUAAUUGACCCGAAAGCAAACGAUCUAACUAUGAUAAGAUGGAUAAACGAUCGAACAGGUUGAUGUUGCAAUAUCAUCUGAUUAAUUGUGGUUAGUAGUGAAAGACAAAUCUGGUUUGCAGAUAGCUGGUUUUCUAUGAAAUAUAUGUAAGUAUAGCCUUUAUAAAUAAUAAUUAUUAUAUAAUAUUAUAUUAAUAUUAUAUAAAGAAUGGUACAGCAAUUAAUAUAUAUUAGGGAACUAUUAAAGUUUUAUUAAUAAUAUUAAAUCUCGAAAUAUUUAAUUAUAUAUAAUAAAGAGUCAGAUUAUGUGCGAUAAGGUAAAUAAUCUAAAGGGAAACAGCCCAGAUUAAGAUAUAAAGUUCCUAAUAAAUAAUAAGUGAAAUAAAUAUUAAAAUAUUAUAAUAUAAUCAGUUAAUGGGUUUGACAAUAACCAUUUUUUAAUGAACAUGUAACAAUGCACUGAUUUAUAAUAAAUAAAAAAAAAUAAUAUUUAAAAUCAAAUAUAUAUAUAUUUGUUAAUAGAUAAUAUACGGAUCUUAAUAAUAAGAAUUAUUUAAUUCCUAAUAUGGAAUAUUAUAUUUUUAUAAUAAAAAUAUAAAUACUGAAUAUCUAAAUAUUAUUAUUACUUUUUUUUUAAUAAUAAUAAUAUGGUAAUAGAACAUUUAAUGAUAAUAUAUAUUAGUUAUUAAUUAAUAUAUGUAUUAAUUAAAUAGAGAAUGCUGACAUGAGUAACGAAAAAAAGGUAUAAACCUUUUCACCUAAAACAUAAGGUUUAACUAUAAAAGUACGGCCCCUAAUUAAAUUAAUAAGAAUAUAAAUAUAUUUAAGAUGGGAUAAUCUAUAUUAAUAAAAAUUUAUCUUAAAAUAUAUAUAUUAUUAAUAAUUAUAUUAAUUAAUUAAUAAUAUAUAUAAUUAUAUUAUAUAUUAUAUAUUUUUUAUAUAAUAUAAACUAAUAAAGAUCAGGAAAUAAUUAAUGUAUACCGUAAUGUAGACCGACUCAGGUAUGUAAGUAGAGAAUAUGAAGGUGAAUUAGAUAAUUAAAGGGAAGGAACUCGGCAAAGAUAGCUCAUAAGUUAGUCAAUAAAGAGUAAUAAGAACAAAGUUGUACAACUGUUUACUAAAAACACCGCACUUUGCAGAAACGAUAAGUUUAAGUAUAAGGUGUGAACUCUGCUCCAUGCUUAAUAUAUAAAUAAAAUUAUUUAACGAUAAUUUAAUUAAAUUUAGGUAAAUAGCAGCCUUAUUAUGAGGGUUAUAAUGUAGCGAAAUUCCUUGGCCUAUAAUUGAGGUCCCGCAUGAAUGACGUAAUGAUACAACAACUGUCUCCCCUUUAAGCUAAGUGAAAUUGAAAUCGUAGUGAAGAUGCUAUGUACCUUCAGCAAGACGGAAAGACCCUAUGCAGCUUUACUGUAAUUAGAUAGAUCGAAUUAUUGUUUAUUAUAUUCAGCAUAUUAAGUAAUCCUAUUAUUAGGUAAUCGUUUAGAUAUUAAUGAGAUACUUAUUAUAAUAUAAUGAUAAUUCUAAUCUUAUAAAUAAUUAUUAUUAUUAUUAUUAAUAAUAA  UGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCA
GCGGCCGUAACUAUAACGGUCCUAAGG
UUUUUUUUUUUU
GGCUUAUCAAGAGAGGUGAAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGUUGAAAGAUGAGCCGA
CGGAGGAACUACUGUCUUCACGCC

==> jobs/LwDKtIlhXr4oSa7w-zTpgwxHMXikC-FInHXmvg/alis_pdb_rna_sequence.dbtype <==

==> jobs/LwDKtIlhXr4oSa7w-zTpgwxHMXikC-FInHXmvg/alis_pdb_rna_sequence.index <==
0   0   21015

==> jobs/LwDKtIlhXr4oSa7w-zTpgwxHMXikC-FInHXmvg/alis_pdb_rna_sequence.m8 <==
unnamed 3J6B_1  1.000   1894    0   0   1   1894    3533    5426    0.000E+00   3395    1894    3296    CAUCUAAGUAACUUAAGGAUAAGAAAUCAACAGAGAUAUUAUGAGUAUUGGUGAGAGAAAAUAAUAAAGGUCUAAUAAGUAUUAUGUGAAAAAAAUGUAAGAAAAUAGGAUAACAAAUUCUAAGACUAAAUACUAUUAAUAAGUAUAGUAAGUACCGUAAGGGAAAGUAUGAAAAUGAUUAUUUUAUAAGCAAUCAUGAAUAUAUUAUAUUAUAUUAAUGAUGUACCUUUUGUAUAAUGGGUCAGCAAGUAAUUAAUAUUAGUAAAACAAUAAGUUAUAAAUAAAUAGAAUAAUAUAUAUAUAUAAAAAAAUAUAUUAAAAUAUUUAAUUAAUAUUAAUUGACCCGAAAGCAAACGAUCUAACUAUGAUAAGAUGGAUAAACGAUCGAACAGGUUGAUGUUGCAAUAUCAUCUGAUUAAUUGUGGUUAGUAGUGAAAGACAAAUCUGGUUUGCAGAUAGCUGGUUUUCUAUGAAAUAUAUGUAAGUAUAGCCUUUAUAAAUAAUAAUUAUUAUAUAAUAUUAUAUUAAUAUUAUAUAAAGAAUGGUACAGCAAUUAAUAUAUAUUAGGGAACUAUUAAAGUUUUAUUAAUAAUAUUAAAUCUCGAAAUAUUUAAUUAUAUAUAAUAAAGAGUCAGAUUAUGUGCGAUAAGGUAAAUAAUCUAAAGGGAAACAGCCCAGAUUAAGAUAUAAAGUUCCUAAUAAAUAAUAAGUGAAAUAAAUAUUAAAAUAUUAUAAUAUAAUCAGUUAAUGGGUUUGACAAUAACCAUUUUUUAAUGAACAUGUAACAAUGCACUGAUUUAUAAUAAAUAAAAAAAAAUAAUAUUUAAAAUCAAAUAUAUAUAUAUUUGUUAAUAGAUAAUAUACGGAUCUUAAUAAUAAGAAUUAUUUAAUUCCUAAUAUGGAAUAUUAUAUUUUUAUAAUAAAAAUAUAAAUACUGAAUAUCUAAAUAUUAUUAUUACUUUUUUUUUAAUAAUAAUAAUAUGGUAAUAGAACAUUUAAUGAUAAUAUAUAUUAGUUAUUAAUUAAUAUAUGUAUUAAUUAAAUAGAGAAUGCUGACAUGAGUAACGAAAAAAAGGUAUAAACCUUUUCACCUAAAACAUAAGGUUUAACUAUAAAAGUACGGCCCCUAAUUAAAUUAAUAAGAAUAUAAAUAUAUUUAAGAUGGGAUAAUCUAUAUUAAUAAAAAUUUAUCUUAAAAUAUAUAUAUUAUUAAUAAUUAUAUUAAUUAAUUAAUAAUAUAUAUAAUUAUAUUAUAUAUUAUAUAUUUUUUAUAUAAUAUAAACUAAUAAAGAUCAGGAAAUAAUUAAUGUAUACCGUAAUGUAGACCGACUCAGGUAUGUAAGUAGAGAAUAUGAAGGUGAAUUAGAUAAUUAAAGGGAAGGAACUCGGCAAAGAUAGCUCAUAAGUUAGUCAAUAAAGAGUAAUAAGAACAAAGUUGUACAACUGUUUACUAAAAACACCGCACUUUGCAGAAACGAUAAGUUUAAGUAUAAGGUGUGAACUCUGCUCCAUGCUUAAUAUAUAAAUAAAAUUAUUUAACGAUAAUUUAAUUAAAUUUAGGUAAAUAGCAGCCUUAUUAUGAGGGUUAUAAUGUAGCGAAAUUCCUUGGCCUAUAAUUGAGGUCCCGCAUGAAUGACGUAAUGAUACAACAACUGUCUCCCCUUUAAGCUAAGUGAAAUUGAAAUCGUAGUGAAGAUGCUAUGUACCUUCAGCAAGACGGAAAGACCCUAUGCAGCUUUACUGUAAUUAGAUAGAUCGAAUUAUUGUUUAUUAUAUUCAGCAUAUUAAGUAAUCCUAUUAUUAGGUAAUCGUUUAGAUAUUAAUGAGAUACUUAUUAUAAUAUAAUGAUAAUUCUAAUCUUAUAAAUAAUUAUUAUUAUUAUUAUUAAUAAUAA  ACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAGAAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGAAUCCCCGCCCCGCGGCGGGGCGCGGGACAUGUGGCGUACGGAAGACCCGCUCCCCGGCGCCGCUCGUGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCGGUAGCGGCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCAGCCCAAAGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACAAGUACCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAACCGUUAAGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGCGGGUCCGGCCGUGUCGGCGGCCCGGCGGAUCUUUCCCGCGCGGGGGACCGUCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCGGGACGGCUGGGAAGGCCCGGCGGGGAAGGUGGCUCGGCCGAGUGUUACAGCCCCCCCGGCAGCAGCACUCGCCGAAUCCCGGGGCCGAGGGAGCGAGACCCGUCGCCGCGCUCUCCCCCCUCCCGGCGCCGCCGGGGGGGGCCGGGCCACCCCUCCCACGGCGCGACCGCUCGGGGCGGACUGUCCCCAGUGCGCCCCGGGCGGGUCGCGCCGUCGGGCCCGGGGGAGGGGCCACGCGCGCGUCCCCCGAAGAGGGGGACGGCGGAGCGAGCGCACGGGGUCGGCGGCGACGUCGGCUACCCACCCGACCCGUCUUGAAACACGGACCAAGGAGUCUAACACGUGCGCGAGUCGGGGGCUCGCACGAAAGCCGCCGUGGCGCAAUGAAGGUGAAGGCCGGCGCGCUCGCCGGCCGAGGUGGGAUCCCGAGGCCUCUCCAGUCCGCCGAGGGCGCACCACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCACGAGCGCACGUGUUAGGACCCGAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGGUCGUCCGACCUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUAGCUGGCGCUCUCGCACACGCAGUUUUAUCCGGUAAAGCGAAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUCUCAAACUUUAAAUGGGUAAGAAGCCCGGCUCGCUGGCGUGGAGCCGGGCGUGGAAUGCGAGUGCCUAGUGGGCCACUUUUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGGUUAAGGCGCCCGAUGCCGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCUGAAAAUGGAUGGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGCCGGCAGUCGAGAGUGGACGGGAGCGGCGGGGGCGGCGCGCGCGCGCGCCCGCCCCCGGAGCCCCGCGGACGCUACGCCGCGACGAGUAGGAGGGCCGCUGCGGUGAGCCUUGAAGCCUAGGGCGCGGGCCCGGGUGGAGCCGCCGCAGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAACGAGAACUUUGAAGGCCGAAGUGGAGAAGGGUUCCAUGUGAACAGCAGUUGAACAUG
unnamed 5MRC_1  0.999   1894    2   0   1   1894    3533    5426    0.000E+00   3390    1894    3296    CAUCUAAGUAACUUAAGGAUAAGAAAUCAACAGAGAUAUUAUGAGUAUUGGUGAGAGAAAAUAAUAAAGGUCUAAUAAGUAUUAUGUGAAAAAAAUGUAAGAAAAUAGGAUAACAAAUUCUAAGACUAAAUACUAUUAAUAAGUAUAGUAAGUACCGUAAGGGAAAGUAUGAAAAUGAUUAUUUUAUAAGCAAUCAUGAAUAUAUUAUAUUAUAUUAAUGAUGUACCUUUUGUAUAAUGGGUCAGCAAGUAAUUAAUAUUAGUAAAACAAUAAGUUAUAAAUAAAUAGAAUAAUAUAUAUAUAUAAAAAAAUAUAUUAAAAUAUUUAAUUAAUAUUAAUUGACCCGAAAGCAAACGAUCUAACUAUGAUAAGAUGGAUAAACGAUCGAACAGGUUGAUGUUGCAAUAUCAUCUGAUUAAUUGUGGUUAGUAGUGAAAGACAAAUCUGGUUUGCAGAUAGCUGGUUUUCUAUGAAAUAUAUGUAAGUAUAGCCUUUAUAAAUAAUAAUUAUUAUAUAAUAUUAUAUUAAUAUUAUAUAAAGAAUGGUACAGCAAUUAAUAUAUAUUAGGGAACUAUUAAAGUUUUAUUAAUAAUAUUAAAUCUCGAAAUAUUUAAUUAUAUAUAAUAAAGAGUCAGAUUAUGUGCGAUAAGGUAAAUAAUCUAAAGGGAAACAGCCCAGAUUAAGAUAUAAAGUUCCUAAUAAAUAAUAAGUGAAAUAAAUAUUAAAAUAUUAUAAUAUAAUCAGUUAAUGGGUUUGACAAUAACCAUUUUUUAAUGAACAUGUAACAAUGCACUGAUUUAUAAUAAAUAAAAAAAAAUAAUAUUUAAAAUCAAAUAUAUAUAUAUUUGUUAAUAGAUAAUAUACGGAUCUUAAUAAUAAGAAUUAUUUAAUUCCUAAUAUGGAAUAUUAUAUUUUUAUAAUAAAAAUAUAAAUACUGAAUAUCUAAAUAUUAUUAUUACUUUUUUUUUAAUAAUAAUAAUAUGGUAAUAGAACAUUUAAUGAUAAUAUAUAUUAGUUAUUAAUUAAUAUAUGUAUUAAUUAAAUAGAGAAUGCUGACAUGAGUAACGAAAAAAAGGUAUAAACCUUUUCACCUAAAACAUAAGGUUUAACUAUAAAAGUACGGCCCCUAAUUAAAUUAAUAAGAAUAUAAAUAUAUUUAAGAUGGGAUAAUCUAUAUUAAUAAAAAUUUAUCUUAAAAUAUAUAUAUUAUUAAUAAUUAUAUUAAUUAAUUAAUAAUAUAUAUAAUUAUAUUAUAUAUUAUAUAUUUUUUAUAUAAUAUAAACUAAUAAAGAUCAGGAAAUAAUUAAUGUAUACCGUAAUGUAGACCGACUCAGGUAUGUAAGUAGAGAAUAUGAAGGUGAAUUAGAUAAUUAAAGGGAAGGAACUCGGCAAAGAUAGCUCAUAAGUUAGUCAAUAAAGAGUAAUAAGAACAAAGUUGUACAACUGUUUACUAAAAACACCGCACUUUGCAGAAACGAUAAGUUUAAGUAUAAGGUGUGAACUCUGCUCCAUGCUUAAUAUAUAAAUAAAAUUAUUUAACGAUAAUUUAAUUAAAUUUAGGUAAAUAGCAGCCUUAUUAUGAGGGUUAUAAUGUAGCGAAAUUCCUUGGCCUAUAAUUGAGGUCCCGCAUGAAUGACGUAAUGAUACAACAACUGUCUCCCCUUUAAGCUAAGUGAAAUUGAAAUCGUAGUGAAGAUGCUAUGUACCUUCAGCAAGACGGAAAGACCCUAUGCAGCUUUACUGUAAUUAGAUAGAUCGAAUUAUUGUUUAUUAUAUUCAGCAUAUUAAGUAAUCCUAUUAUUAGGUAAUCGUUUAGAUAUUAAUGAGAUACUUAUUAUAAUAUAAUGAUAAUUCUAAUCUUAUAAAUAAUUAUUAUUAUUAUUAUUAAUAAUAA  ACGCGCCAGCGCCGAUGGUACUGGGCGGGCGACCGCCUGGGAGAGUAGGUCGGUGCGGGGGA
AAGCAGCUUUACAGAUCAAUGGCGGAGGGAGGUCAACAUCAAGAACUGUGGGCCUUUUAUUGCCUAUAGAACUUAUAACGAACAUGGUUCUUGCCUUUUACCAGAACCAUCCGGGUGUUGUCUCCAUAGAAACAGGUAAAGCUGUCCGUUACUGUGGGCUUGCCAUAUUUUUUGGAACUUUUCUGCCCUUUUUCUCAAUGAGUAAGGAGGGCGU
GGGCUGAAGGAUGGAGACGUCUAGGCCC
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAAAAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGAAUCCCCGCCCCGCGGGGCGCGGGACAUGUGGCGUACGGAAGACCCGCUCCCCGGCGCCGCUCGUGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCGGUAGCGGCCCCCGGCGCGCGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCAGCCCAAAGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACAAGUACCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAACCGUUAAGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGCGGGUCCGGCCGUGUCGGCGGCCCGGCGGAUCUUUCCCGCCCCCGGGGUCGGCGGGGGACCGUCCCCCGGACCGGCGACCGGCCGCCGCCGGGCGCAUUUCCAGGCGGUGCGCCGCGACCGGCUCCGGGACGGCUGGGAAGGCCCGGCGGGGAAGGUGGCUCGGGGCCCCCGAGUGUUACAGCCCCCCCGGCAGCAGCACUCGCCGAAUCCCGGGGCCGAGGGAGCGAGACCCGUCGCCGCGCUCUCCCCCCUGGGGGGGCCGGGCCACCCCUCCCACGGCGCGACCGCUCUCCCAGGGGGCGGGGCGGACUGUCCCCAGUGCGCCCCGGGCGGGUCGCGCCGUCGGGCCCGGGGGGCCACGCGCGCGUCCCGGGACGGCGGAGCGAGCGCACGGGGUCGGCGGCGACGUCGGCUACCCACCCGACCCGUCUUGAAACACGGACCAAGGAGUCUAACACGUGCGCGAGUCGGGGGCUCGCACGAAAGCCGCCGUGGCGCAAUGAAGGUGAAGGCCGGCGCGCUCGCCGGCCGAGGUGGGAUCCCGAGGCCUCUCCAGUCCGCCGAGGGGCACCACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCACGAGCGCACGUGUUAGGACCCGAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGGUCGUCCGACCUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUAGCUGGCGCUCUCGCCCACGCAGUUUUAUCCGGUAAAGCGAAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUCUCAAACUUUAAAUGGGUAAGAAGCCCGGCUCGCUGGCGUGGAGCCGGGGUGGAAUGCGAGUGCCUAGUGGGCCACUUUUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGGUUAAGGCGCCCGAUGCCGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCAC
unnamed 5MRF_1  0.999   1894    2   0   1   1894    3533    5426    0.000E+00   3390    1894    3296    CAUCUAAGUAACUUAAGGAUAAGAAAUCAACAGAGAUAUUAUGAGUAUUGGUGAGAGAAAAUAAUAAAGGUCUAAUAAGUAUUAUGUGAAAAAAAUGUAAGAAAAUAGGAUAACAAAUUCUAAGACUAAAUACUAUUAAUAAGUAUAGUAAGUACCGUAAGGGAAAGUAUGAAAAUGAUUAUUUUAUAAGCAAUCAUGAAUAUAUUAUAUUAUAUUAAUGAUGUACCUUUUGUAUAAUGGGUCAGCAAGUAAUUAAUAUUAGUAAAACAAUAAGUUAUAAAUAAAUAGAAUAAUAUAUAUAUAUAAAAAAAUAUAUUAAAAUAUUUAAUUAAUAUUAAUUGACCCGAAAGCAAACGAUCUAACUAUGAUAAGAUGGAUAAACGAUCGAACAGGUUGAUGUUGCAAUAUCAUCUGAUUAAUUGUGGUUAGUAGUGAAAGACAAAUCUGGUUUGCAGAUAGCUGGUUUUCUAUGAAAUAUAUGUAAGUAUAGCCUUUAUAAAUAAUAAUUAUUAUAUAAUAUUAUAUUAAUAUUAUAUAAAGAAUGGUACAGCAAUUAAUAUAUAUUAGGGAACUAUUAAAGUUUUAUUAAUAAUAUUAAAUCUCGAAAUAUUUAAUUAUAUAUAAUAAAGAGUCAGAUUAUGUGCGAUAAGGUAAAUAAUCUAAAGGGAAACAGCCCAGAUUAAGAUAUAAAGUUCCUAAUAAAUAAUAAGUGAAAUAAAUAUUAAAAUAUUAUAAUAUAAUCAGUUAAUGGGUUUGACAAUAACCAUUUUUUAAUGAACAUGUAACAAUGCACUGAUUUAUAAUAAAUAAAAAAAAAUAAUAUUUAAAAUCAAAUAUAUAUAUAUUUGUUAAUAGAUAAUAUACGGAUCUUAAUAAUAAGAAUUAUUUAAUUCCUAAUAUGGAAUAUUAUAUUUUUAUAAUAAAAAUAUAAAUACUGAAUAUCUAAAUAUUAUUAUUACUUUUUUUUUAAUAAUAAUAAUAUGGUAAUAGAACAUUUAAUGAUAAUAUAUAUUAGUUAUUAAUUAAUAUAUGUAUUAAUUAAAUAGAGAAUGCUGACAUGAGUAACGAAAAAAAGGUAUAAACCUUUUCACCUAAAACAUAAGGUUUAACUAUAAAAGUACGGCCCCUAAUUAAAUUAAUAAGAAUAUAAAUAUAUUUAAGAUGGGAUAAUCUAUAUUAAUAAAAAUUUAUCUUAAAAUAUAUAUAUUAUUAAUAAUUAUAUUAAUUAAUUAAUAAUAUAUAUAAUUAUAUUAUAUAUUAUAUAUUUUUUAUAUAAUAUAAACUAAUAAAGAUCAGGAAAUAAUUAAUGUAUACCGUAAUGUAGACCGACUCAGGUAUGUAAGUAGAGAAUAUGAAGGUGAAUUAGAUAAUUAAAGGGAAGGAACUCGGCAAAGAUAGCUCAUAAGUUAGUCAAUAAAGAGUAAUAAGAACAAAGUUGUACAACUGUUUACUAAAAACACCGCACUUUGCAGAAACGAUAAGUUUAAGUAUAAGGUGUGAACUCUGCUCCAUGCUUAAUAUAUAAAUAAAAUUAUUUAACGAUAAUUUAAUUAAAUUUAGGUAAAUAGCAGCCUUAUUAUGAGGGUUAUAAUGUAGCGAAAUUCCUUGGCCUAUAAUUGAGGUCCCGCAUGAAUGACGUAAUGAUACAACAACUGUCUCCCCUUUAAGCUAAGUGAAAUUGAAAUCGUAGUGAAGAUGCUAUGUACCUUCAGCAAGACGGAAAGACCCUAUGCAGCUUUACUGUAAUUAGAUAGAUCGAAUUAUUGUUUAUUAUAUUCAGCAUAUUAAGUAAUCCUAUUAUUAGGUAAUCGUUUAGAUAUUAAUGAGAUACUUAUUAUAAUAUAAUGAUAAUUCUAAUCUUAUAAAUAAUUAUUAUUAUUAUUAUUAAUAAUAA  UGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCA
GCGGCCGUAACUAUAACGGUCCUAAGG
UUUUUUUUUUUU
GGCUUAUCAAGAGAGGUGAAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGUUGAAAGAUGAGCCGA
CGGAGGAACUACUGUCUUCACGCC
milot-mirdita commented 4 years ago

That looks like an MMseqs2 bug, the target alignment it prints is completely broken. Could you upload the query/target sequence(s)?

I'll try to reproduce the issue locally, it might already be fixed in release 11, then I would only need to update the containers.

By the way, if you want a set of stickers (see https://twitter.com/thesteinegger/status/1201076220957315074), send me your address to milot at mirdita de.

milot-mirdita commented 4 years ago

I actually only need your unnamed query seq and the 5MRF_1 target seq. That should already be enough to reproduce the issue.

josemduarte commented 4 years ago

Query sequence is:

CAUCUAAGUAACUUAAGGAUAAGAAAUCAACAGAGAUAUUAUGAGUAUUGGUGAGAGAAAAUAAUAAAGGUCUAAUAAGUAUUAUGUGAAAAAAAUGUAAGAAAAUAGGAUAACAAAUUCUAAGACUAAAUACUAUUAAUAAGUAUAGUAAGUACCGUAAGGGAAAGUAUGAAAAUGAUUAUUUUAUAAGCAAUCAUGAAUAUAUUAUAUUAUAUUAAUGAUGUACCUUUUGUAUAAUGGGUCAGCAAGUAAUUAAUAUUAGUAAAACAAUAAGUUAUAAAUAAAUAGAAUAAUAUAUAUAUAUAAAAAAAUAUAUUAAAAUAUUUAAUUAAUAUUAAUUGACCCGAAAGCAAACGAUCUAACUAUGAUAAGAUGGAUAAACGAUCGAACAGGUUGAUGUUGCAAUAUCAUCUGAUUAAUUGUGGUUAGUAGUGAAAGACAAAUCUGGUUUGCAGAUAGCUGGUUUUCUAUGAAAUAUAUGUAAGUAUAGCCUUUAUAAAUAAUAAUUAUUAUAUAAUAUUAUAUUAAUAUUAUAUAAAGAAUGGUACAGCAAUUAAUAUAUAUUAGGGAACUAUUAAAGUUUUAUUAAUAAUAUUAAAUCUCGAAAUAUUUAAUUAUAUAUAAUAAAGAGUCAGAUUAUGUGCGAUAAGGUAAAUAAUCUAAAGGGAAACAGCCCAGAUUAAGAUAUAAAGUUCCUAAUAAAUAAUAAGUGAAAUAAAUAUUAAAAUAUUAUAAUAUAAUCAGUUAAUGGGUUUGACAAUAACCAUUUUUUAAUGAACAUGUAACAAUGCACUGAUUUAUAAUAAAUAAAAAAAAAUAAUAUUUAAAAUCAAAUAUAUAUAUAUUUGUUAAUAGAUAAUAUACGGAUCUUAAUAAUAAGAAUUAUUUAAUUCCUAAUAUGGAAUAUUAUAUUUUUAUAAUAAAAAUAUAAAUACUGAAUAUCUAAAUAUUAUUAUUACUUUUUUUUUAAUAAUAAUAAUAUGGUAAUAGAACAUUUAAUGAUAAUAUAUAUUAGUUAUUAAUUAAUAUAUGUAUUAAUUAAAUAGAGAAUGCUGACAUGAGUAACGAAAAAAAGGUAUAAACCUUUUCACCUAAAACAUAAGGUUUAACUAUAAAAGUACGGCCCCUAAUUAAAUUAAUAAGAAUAUAAAUAUAUUUAAGAUGGGAUAAUCUAUAUUAAUAAAAAUUUAUCUUAAAAUAUAUAUAUUAUUAAUAAUUAUAUUAAUUAAUUAAUAAUAUAUAUAAUUAUAUUAUAUAUUAUAUAUUUUUUAUAUAAUAUAAACUAAUAAAGAUCAGGAAAUAAUUAAUGUAUACCGUAAUGUAGACCGACUCAGGUAUGUAAGUAGAGAAUAUGAAGGUGAAUUAGAUAAUUAAAGGGAAGGAACUCGGCAAAGAUAGCUCAUAAGUUAGUCAAUAAAGAGUAAUAAGAACAAAGUUGUACAACUGUUUACUAAAAACACCGCACUUUGCAGAAACGAUAAGUUUAAGUAUAAGGUGUGAACUCUGCUCCAUGCUUAAUAUAUAAAUAAAAUUAUUUAACGAUAAUUUAAUUAAAUUUAGGUAAAUAGCAGCCUUAUUAUGAGGGUUAUAAUGUAGCGAAAUUCCUUGGCCUAUAAUUGAGGUCCCGCAUGAAUGACGUAAUGAUACAACAACUGUCUCCCCUUUAAGCUAAGUGAAAUUGAAAUCGUAGUGAAGAUGCUAUGUACCUUCAGCAAGACGGAAAGACCCUAUGCAGCUUUACUGUAAUUAGAUAGAUCGAAUUAUUGUUUAUUAUAUUCAGCAUAUUAAGUAAUCCUAUUAUUAGGUAAUCGUUUAGAUAUUAAUGAGAUACUUAUUAUAAUAUAAUGAUAAUUCUAAUCUUAUAAAUAAUUAUUAUUAUUAUUAUUAAUAAUAA

and sequence of 5MRF_1 is:

>5MRF_1
GUAAAAAGUAGAAUAAUAGAUUUGAAAUAUUUAUUAUAUAGAUUUAAAGAGAUAAUCAUGGAGUAUAAUAAUUAAAUUUA
AUAAAUUUAAUAUAACUAUUAAUAGAAUUAGGUUACUAAUAAAUUAAUAACAAUUAAUUUUAAAACCUAAAGGUAAACCU
UUAUAUUAAUAAUGUUAUUUUUUAUUAUUUUUAUAAUAAGAAUAAUUAUUAAUAAUAAUAAACUAAGUGAACUGAAACAU
CUAAGUAACUUAAGGAUAAGAAAUCAACAGAGAUAUUAUGAGUAUUGGUGAGAGAAAAUAAUAAAGGUCUAAUAAGUAUU
AUGUGAAAAAAAUGUAAGAAAAUAGGAUAACAAAUUCUAAGACUAAAUACUAUUAAUAAGUAUAGUAAGUACCGUAAGGG
AAAGUAUGAAAAUGAUUAUUUUAUAAGCAAUCAUGAAUAUAUUAUAUUAUAUUAAUGAUGUACCUUUUGUAUAAUGGGUC
AGCAAGUAAUUAAUAUUAGUAAAACAAUAAGUUAUAAAUAAAUAGAAUAAUAUAUAUAUAUAAAAAAAUAUAUUAAAAUA
UUUAAUUAAUAUUAAUUGACCCGAAAGCAAACGAUCUAACUAUGAUAAGAUGGAUAAACGAUCGAACAGGUUGAUGUUGC
AAUAUCAUCUGAUUAAUUGUGGUUAGUAGUGAAAGACAAAUCUGGUUUGCAGAUAGCUGGUUUUCUAUGAAAUAUAUGUA
AGUAUAGCCUUUAUAAAUAAUAAUUAUUAUAUAAUAUUAUAUUAAUAUUAUAUAAAGAAUGGUACAGCAAUUAAUAUAUA
UUAGGGAACUAUUAAAGUUUUAUUAAUAAUAUUAAAUCUCGAAAUAUUUAAUUAUAUAUAAUAAAGAGUCAGAUUAUGUG
CGAUAAGGUAAAUAAUCUAAAGGGAAACAGCCCAGAUUAAGAUAUAAAGUUCCUAAUAAAUAAUAAGUGAAAUAAAUAUU
AAAAUAUUAUAAUAUAAUCAGUUAAUGGGUUUGACAAUAACCAUUUUUUAAUGAACAUGUAACAAUGCACUGAUUUAUAA
UAAAUAAAAAAAAAUAAUAUUUAAAAUCAAAUAUAUAUAUAUUUGUUAAUAGAUAAUAUACGGAUCUUAAUAAUAAGAAU
UAUUUAAUUCCUAAUAUGGAAUAUUAUAUUUUUAUAAUAAAAAUAUAAAUACUGAAUAUCUAAAUAUUAUUAUUACUUUU
UUUUUAAUAAUAAUAAUAUGGUAAUAGAACAUUUAAUGAUAAUAUAUAUUAGUUAUUAAUUAAUAUAUGUAUUAAUUAAA
UAGAGAAUGCUGACAUGAGUAACGAAAAAAAGGUAUAAACCUUUUCACCUAAAACAUAAGGUUUAACUAUAAAAGUACGG
CCCCUAAUUAAAUUAAUAAAAAUAUAAAUAUAUUUAAGAUGGGAUAAUCUAUAUUAAUAAAAAUUUAUCUUAAAAUAUAU
AUAUUAUUAAUAAUUAUAUUAAUUAAUUAAUAAUAUAUAUAAUUAUAUUAUAUAUUAUAUAUUUUUUAUAUAAUAUAAAC
UAAUAAAGAUCAGGAAAUAAUUAAUGUAUACCGUAAUGUAGACCGACUCAGGUAUGUAAGUAGAGAAUAUGAAGGUGAAU
UAGAUAAUUAAAGGGAAGGAACUCGGCAAAGAUAGCUCAUAAGUUAGUCAAUAAAGAGUAAUAAGAACAAAGUUGUACAA
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milot-mirdita commented 4 years ago

Seems to be fixed in release 11, I'll have to build new containers.

milot-mirdita commented 4 years ago

The containers are on the latest version again now. The issue should be resolved there.

josemduarte commented 4 years ago

Thanks @milot-mirdita !

I've tried building a server from scratch and it doesn't seem to be pulling the latest mmseqs version. Logs say that my mmseqs is on: 6d92cd21676ccc36531f2852f7eb747f6389435f (which corresponds to release 10)

What I do is :

  1. clone this repo
  2. add some dbs in databases directory
  3. run docker-compose
milot-mirdita commented 4 years ago

You might need to run something like:

docker-compose down
docker-compose pull

To make sure that the base images are up to date.

milot-mirdita commented 4 years ago

You might need to run something like:

docker-compose down
docker-compose pull

To make sure that the base images are up to date.

josemduarte commented 4 years ago

I've tried that:

# docker-compose pull
Pulling mmseqs-web-redis (redis:alpine)...
alpine: Pulling from library/redis
Digest: sha256:cb9783b1c39bb34f8d6572406139ab325c4fac0b28aaa25d5350495637bb2f76
Status: Image is up to date for redis:alpine
Pulling mmseqs-web-api (soedinglab/mmseqs2-app-backend:version-4)...
version-4: Pulling from soedinglab/mmseqs2-app-backend
Digest: sha256:0282aa7dcc1b05b4ad62f021a2c50b4cf77a97e2a55bc2b86f0e1a618850859e
Status: Image is up to date for soedinglab/mmseqs2-app-backend:version-4
Pulling mmseqs-web-webserver (soedinglab/mmseqs2-app-frontend:version-4)...
version-4: Pulling from soedinglab/mmseqs2-app-frontend
Digest: sha256:654eb66a041ad260d83b5bda946124ccf56a2c18dacdf6be677e7263e7db2d55
Status: Image is up to date for soedinglab/mmseqs2-app-frontend:version-4
Pulling mmseqs-web-worker (soedinglab/mmseqs2-app-backend:version-4)...
version-4: Pulling from soedinglab/mmseqs2-app-backend
Digest: sha256:0282aa7dcc1b05b4ad62f021a2c50b4cf77a97e2a55bc2b86f0e1a618850859e
Status: Image is up to date for soedinglab/mmseqs2-app-backend:version-4

but the version reported by the app is still 6d92cd21676ccc36531f2852f7eb747f6389435f

milot-mirdita commented 4 years ago

Sorry, that makes sense. I've forgotten to tag a release so it won’t actually make new tagged images.

milot-mirdita commented 4 years ago

I tagged the containers correctly now and docker-compose should work after updating the repository.

The electron app seems to still be broken, but that doesn't affect docker.

josemduarte commented 4 years ago

Fantastic, thank you @milot-mirdita ! All works well now! I'll close the issue.