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soedinglab / MMseqs2-App

MMseqs2 app to run on your workstation or servers
https://search.foldseek.com
GNU General Public License v3.0
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Running it in kubernetes #83

Open titansmc opened 10 months ago

titansmc commented 10 months ago

Hi, We would like to run it in k8s. Are you aware of anyone running it in k8s so we don't need to reinvent the wheel ?

Cheers.

milot-mirdita commented 10 months ago

We don't use k8s. We'd be happy about any PRs describing your experience with it.

josemduarte commented 10 months ago

At RCSB PDB we are running it in k8s, for now in a dev environment but soon in production. We use a helm chart, configured for our particular environment and use case. The chart is in a private repo at the moment. @titansmc would you have any specific questions?

titansmc commented 10 months ago

At RCSB PDB we are running it in k8s, for now in a dev environment but soon in production. We use a helm chart, configured for our particular environment and use case. The chart is in a private repo at the moment. @titansmc would you have any specific questions?

Not questions, but if you could share the chart, we wouldn't need to write our own, it would be nice! In case it is adjusted to your environment doesn't matter, we wouldn't need to start from scratch.

josemduarte commented 10 months ago

Unfortunately we can't directly share the github repo. The chart we have is too specific to our environment plus it has a lot of internal business not relevant elsewhere. I think it'd be a nice project to try to create a more general chart, possibly directly in this repo. That would be very useful for the whole community.