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soedinglab / MMseqs2-App

MMseqs2 app to run on your workstation or servers
https://search.foldseek.com
GNU General Public License v3.0
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"docker-compose run db-setup PDB" not working #86

Closed serbulent-av closed 11 months ago

serbulent-av commented 11 months ago

docker-compose run db-setup PDB is not working since the file is tried to download with https protocol from ftp which is not supported; https://www.ebi.ac.uk/pdbe/news/wwpdb-news-deprecation-ftp-file-download-protocol-pdb-archive#:~:text=ftp.wwpdb.org%20for%20FTP,not%20accept%20HTTP%2FS%20traffic.

If the relevant file is updated with the http site the issue should be solved.

milot-mirdita commented 11 months ago

I rebuilt the docker images, if you pull again you should have the latest MMseqs2 with the https url

serbulent-av commented 11 months ago

Yes it works now thanks.