Problems compiling MMseqs2

[genomewalker]

Hi I am trying to compile the MPI version of MMseqs2 and I am getting the following error

Expected Behavior

Should compile without errors

Current Behavior

Fails with:

src/CMakeFiles/mmseqs-framework.dir/build.make:1598: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o] Error 1
CMakeFiles/Makefile2:459: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/all' failed
make[1]: *** [src/CMakeFiles/mmseqs-framework.dir/all] Error 2
Makefile:127: recipe for target 'all' failed
make: *** [all] Error 2

Steps to Reproduce (for bugs)

cmake -DHAVE_MPI=1 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=. ..
make

MMseqs Output (for bugs)

Full error log here

Context

Providing context helps us come up with a solution and improve our documentation for the future.

Your Environment

Include as many relevant details about the environment you experienced the bug in.

• Git commit used (The string after "MMseqs Version:" when you execute MMseqs without any parameters): fe2b746e63519424f565b4fbeb4ca5dba905adc7
• Which MMseqs version was used (Statically-compiled, self-compiled, Homebrew, etc.): Self-compiled
• For self-compiled and Homebrew: Compiler and Cmake versions used and their invocation: GCC: gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.10) OPENMPI: (OpenRTE) 1.10.2 CMAKE: 3.5.1
• Server specifications (especially CPU support for AVX2/SSE and amount of system memory): Intel Xeon Processor (Skylake, IBRS) with 256GB ()
• Operating system and version: Ubuntu 5.4.0-6ubuntu1~16.04.10

[milot-mirdita]

Thanks for the bug report. MMseqs2 MPI should compile again in git master.

@martin-steinegger please review 7835260463bf8e4fc2b08096b55668e40a906033

[genomewalker]

Hi Milot Working perfectly now :-) Thank you very much Antonio

[martin-steinegger]

Looks good Milot. Thank you!