Error: result2flat died

[Ch-rode]

Hello i'm trying to run easy-cluster on a huge file (20G), I did it in the past without problems but now I'm having this error. It runned for 3 hours and then it stopped like this. Thank you !

Expected Behavior

3 file outpus

Current Behavior

[=================================================================] 3.14M 0s 883ms Time for merging to clu_rep: 0h 0m 11s 177ms Time for processing: 0h 0m 22s 705ms result2flat tmp/7717928696068854373/input tmp/7717928696068854373/input tmp/7717928696068854373/clu_rep tmp/7717928696068854373/rep_seq.fasta --use-fasta-header -v 3

Time for processing: 0h 0m 24s 606ms createseqfiledb tmp/7717928696068854373/input tmp/7717928696068854373/clu tmp/7717928696068854373/clu_seqs --threads 20 -v 3

[=================================================================] 3.14M 32s 466ms Time for merging to clu_seqs: 0h 0m 4s 487ms Time for processing: 0h 3m 9s 540ms result2flat tmp/7717928696068854373/input tmp/7717928696068854373/input tmp/7717928696068854373/clu_seqs tmp/7717928696068854373/all_seqs.fasta -v 3

Cannot close file tmp/7717928696068854373/all_seqs.fasta Error: result2flat died

Steps to Reproduce (for bugs)

this is my command: mmseqs easy-cluster fasta.txt prefix_example --split-memory-limit 384G tmp"

Your Environment

my cluster node is:

SBATCH --ntasks=1

SBATCH --mem=512000

[martin-steinegger]

This sounds like a filesystem error while closing the result file. Could it be possible that the system ran out of space?