soedinglab / MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite
https://mmseqs.com
MIT License
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createdb cannot open the output file for writing #573

Closed cmonat closed 2 years ago

cmonat commented 2 years ago

Hello,

I'm trying to run createdb but got the following error message. I have tried with less FASTA files as input but I still got the same message.

Expected Behavior

createdb works without error

Current Behavior

createdb is not able to create a DB since it cannot open the output file for writing

Steps to Reproduce (for bugs)

Please make sure to execute the reproduction steps with newly recreated and empty tmp folders.

MMseqs Output (for bugs)

MMseqs Version: 92deb92fb46583b4c68932111303d12dfa121364 Database type 0 Shuffle input database true Createdb mode 0 Write lookup file 1 Offset of numeric ids 0 Compressed 0 Verbosity 3

Converting sequences Cannot open sequenceDB.source for writing

Context

Providing context helps us come up with a solution and improve our documentation for the future.

Your Environment

Include as many relevant details about the environment you experienced the bug in.

milot-mirdita commented 2 years ago

Can you please post the full command line that you called?

cmonat commented 2 years ago

I just try again and without changing the command, now it's working! Thank you anyway

Have a great day C.