Long cstranslate runtimes

soedinglab / hh-suite

Remote protein homology detection suite.

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3019-7

GNU General Public License v3.0

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Long cstranslate runtimes #152

Open tanhevg opened 5 years ago

tanhevg commented 5 years ago

When trying to build an HHBlits database from linclust output of 250mio clusters over 0.5bn sequences, cstranslate_mpi runs for a few days and does not produce an output

Your Environment

cstranslate_mpi version 2.2.26
Linux 3.10.0-957.1.3.el7.x86_64
AVX2 and SSE supported
80 x Intel(R) Xeon(R) CPU E5-2698 v4 @ 2.20GHz
0.5 Tb RAM

martin-steinegger commented 4 years ago

@tanhevg do you still encounter this issue?

tanhevg commented 4 years ago

Hey, sorry, I have moved on to something else at the moment. Will keep this in mind next time I need to build a large database for HHBlits search.