ApollineBruley
commented
4 years ago Hello ali1199,
I am having the same issue, did you find a way to solve this?
Thanks !
Open eli1199 opened 5 years ago
ApollineBruley
commented
4 years ago Hello ali1199,
I am having the same issue, did you find a way to solve this?
Thanks !
ApollineBruley
commented
4 years ago Hello ali1199,
I am having the same issue, did you find a way to solve this?
Thanks !
If anyone else is confronted to this issue : for me the problem came from the .a3m and .hhm file names. I shortened them and removed the '_' and '.' (I'm not sure what caused the problem exactly), and it works perfectly now!
Expected Behavior
Makes database with user supplied .a3m file(s)
Current Behavior
Erorr of: UnicodeDecodeError: 'utf-8' codec can't decode byte 0xff in position 36: invalid start byte
Steps to Reproduce (for bugs)
python hhsuitedb.py --ia3m=og4320.a3m -o my_db --cpu=8 --force
HH-suite Output (for bugs)
Unlinking entries from '/tmp/tmprv97qam3/files.dat' Unlinking entries from '/tmp/tmprv97qam3/files.dat' Traceback (most recent call last): File "hhsuitedb.py", line 482, in
main()
File "hhsuitedb.py", line 478, in main
check_database(options.output_basename, options.nr_cores, options.force_mode)
File "hhsuitedb.py", line 376, in check_database
calculate_hhm(threads, output_basename+"_a3m", output_basename+"_hhm")
File "hhsuitedb.py", line 100, in calculate_hhm
large_a3ms = get_large_a3ms(a3m_base_path)
File "hhsuitedb.py", line 76, in get_large_a3ms
entries = ffindex.read_index(a3m_base_path+".ffindex")
File "ffindex.py", line 20, in read_index
for line in fh:
File "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/3.7.0/lib/python3.7/codecs.py", line 322, in decode
(result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xff in position 36: invalid start byte
Your Environment
Include as many relevant details about the environment you experienced the issue in.