addss.pl :: blastpgp failure due to incorrect input file name

[EricDeveaud]

hello while testing hhsuite/3.2.0 I have the following error with addss.pl

bigmess:hhsuite/3.2.0 > addss.pl out.a3m
$ cp out.a3m /tmp/dHAvg131b1/A2cQmTLZdi.in.a3m
Filtering alignment to diversity 7 ...
$ hhfilter -v 1 -neff 7 -i /tmp/dHAvg131b1/A2cQmTLZdi.in.a3m -o /tmp/dHAvg131b1/A2cQmTLZdi.in.a3m
$ reformat.pl -v 1 -r -noss a3m psi /tmp/dHAvg131b1/A2cQmTLZdi.in.a3m /tmp/dHAvg131b1/A2cQmTLZdi.in.psi
Predicting secondary structure with PSIPRED ... $ blastpgp -b 1 -j 1 -h 0.001 -d /local/gensoft2/exe/hhsuite/3.2.0/data/do_not_delete -i /tmp/dHAvg131b1/A2cQmTLZdi.sq -B /tmp/dHAvg131b1/A2cQmTLZdi.in.psi -C /tmp/dHAvg131b1/A2cQmTLZdi.chk 1> /tmp/dHAvg131b1/A2cQmTLZdi.blalog 2> /tmp/dHAvg131b1/A2cQmTLZdi.blalog
sh: line 1: 61737 Segmentation fault      (core dumped) blastpgp -b 1 -j 1 -h 0.001 -d /local/gensoft2/exe/hhsuite/3.2.0/data/do_not_delete -i /tmp/dHAvg131b1/A2cQmTLZdi.sq -B /tmp/dHAvg131b1/A2cQmTLZdi.in.psi -C /tmp/dHAvg131b1/A2cQmTLZdi.chk > /tmp/dHAvg131b1/A2cQmTLZdi.blalog 2> /tmp/dHAvg131b1/A2cQmTLZdi.blalog

Error: command 'blastpgp -b 1 -j 1 -h 0.001 -d /local/gensoft2/exe/hhsuite/3.2.0/data/do_not_delete -i /tmp/dHAvg131b1/A2cQmTLZdi.sq -B /tmp/dHAvg131b1/A2cQmTLZdi.in.psi -C /tmp/dHAvg131b1/A2cQmTLZdi.chk 1> /tmp/dHAvg131b1/A2cQmTLZdi.blalog 2> /tmp/dHAvg131b1/A2cQmTLZdi.blalog' returned error code 139

we can note that blastpgp is called with xyz.sq as input file as shown on the error log above. that does not exist

regards

Eric

[xu-j1234566]

did you resolve it? I met the same problem