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soedinglab / hh-suite

Remote protein homology detection suite.
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3019-7
GNU General Public License v3.0
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BFD a3m issue #251

Closed mhj112358 closed 3 years ago

mhj112358 commented 3 years ago

Hi guys,

I am working on constructing multiple sequence alignments by HHblits-ing through the BFD database. However, when I try to unpack tar.gz file I downloaded from https://bfd.mmseqs.com, I have 13T disk space available but always get the following error:

tar: bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt_a3m.ffdata: Wrote only 4608 of 10240 bytes

Have you guys encountered this and any suggestions on how to resolve it?

Thanks a lot.

milot-mirdita commented 3 years ago

I added both an MD5 hash and the final size in byte to the download page. Could you please check if they match? If they don't match please try to download with aria2c instead of wget or curl. We have had good experiences with that tool and downloading large databases such as the BFD.

mhj112358 commented 3 years ago

Thank you very much for your kind reply. After a thorough system check, I've found out the cause to be my hard disk being damaged and now it is working properly. I'll close this issue now :)