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soedinglab / hh-suite

Remote protein homology detection suite.
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3019-7
GNU General Public License v3.0
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hhsearch can not open file 'pdb70/pdb70_cs219.ffdata' #290

Closed XiaoTigerHAO closed 2 years ago

XiaoTigerHAO commented 2 years ago

Hi,

I use conda created a virtual enviroument for running hhsearch on ubuntu 20.04.

The cmd like this: hhsearch -i /tmp/123456/query.a3m -o /tmp/123456/output.hhr -maxseq 1000000 -d /public/AlphaFoldDB/pdb70/pdb70

while i got an error shown like this: ERROR: In /opt/conda/conda-bld/hhsuite_1616660820288/work/src/ffindexdatabase.cpp:11: FFindexDatabase: ERROR: could not open file '/public/AlphaFoldDB/pdb70/pdb70_cs219.ffdata'

I have re-downloaded the latest dataset several times.

the error always occurs.

Please help on this.

Thanks a lot.

best, user Sep 24, 2021

DominicLogel commented 2 years ago

Hello, I have this same issue. How were you able to solve this?

wdnmd80 commented 2 years ago

Maybe database is not readable, try sudo chmod a=rwx /public/AlphaFoldDB/pdb70/*