hhblits segmentation fault

soedinglab / hh-suite

Remote protein homology detection suite.

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3019-7

GNU General Public License v3.0

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hhblits segmentation fault #291

Closed xinyu-g closed 2 years ago

xinyu-g commented 2 years ago

:exclamation: Make to check out our User Guide.

Steps to Reproduce (for bugs)

I'm running hhblits and ran into segmentation fault error. I'm not quite sure what is causing the issue. Can someone help me? hhblits -i input.fasta -o /dev/null -ohhm PROFILE.hhm -n 2 -d uniclust30_2017_04/uniclust30_2017_04 -oa3m MSA.a3m

HH-suite Output (for bugs)

gdb Backtrace

milot-mirdita commented 2 years ago

I see a /mnt/c/Users there. Is this a Cygwin build of HH-suite? Not sure we can help you with that. I would recommend to switch to WSL (see https://docs.microsoft.com/en-us/windows/wsl/install) and try using the normal Linux binaries.

xinyu-g commented 2 years ago

I see a /mnt/c/Users there. Is this a Cygwin build of HH-suite? Not sure we can help you with that. I would recommend to switch to WSL (see https://docs.microsoft.com/en-us/windows/wsl/install) and try using the normal Linux binaries.

This was ran in WSL2 using Linux Binaries. I have tried both bioconda and compile from source, both gave me the same problem here.

milot-mirdita commented 2 years ago

Does the issue also happen with a newer database?