PC_00001_ali.a3m 0 222685 104 0
PC_00002_ali.a3m 222685 180206 85 0
PC_00003_ali.a3m 402891 154761 80 0
WARNING: Missing entry PC_00003_ali.a3m in genes_clust_95_all_db_cs219.ff{data,index}!
WARNING: Missing entry PC_00002_ali.a3m in genes_clust_95_all_db_cs219.ff{data,index}!
WARNING: Missing entry PC_00001_ali.a3m in genes_clust_95_all_db_cs219.ff{data,index}!
You may try to use the option --force to fix the database!
Files generated:
88 Oct 28 16:42 genes_clust_95_all_db_a3m.ffindex
557652 Oct 28 16:42 genes_clust_95_all_db_a3m.ffdata
0 Oct 28 16:42 genes_clust_95_all_db_cs219.ffindex
0 Oct 28 16:42 genes_clust_95_all_db_cs219.ffdata
83 Oct 28 16:42 genes_clust_95_all_db_hhm.ffindex
97308 Oct 28 16:42 genes_clust_95_all_db_hhm.ffdata
Content of output files:
Context
Trying to run hhsuitedb.py as part of this code (line 149).
Your Environment
The hhsuite version I installed was compiled from source by cloning from github on October 27.
Running on Ubuntu 20.04.3 LTS
System memory - MemTotal: 16151700 kB
Expected Behavior
Build a database with hhsuitedb.py
Current Behavior
cs219.ffdata and cs219.ffindex files are generated as empty files
Steps to Reproduce
Command ran: hhsuitedb.py --ia3m=genes_clust_95_PCs/a3m --ihhm=genes_clust_95_PCs/.hmm -o genes_clust_95_all_db --cpu 2
Content of the directory genes_clust_95_PCs/ :
HH-suite Output:
Files generated:
Content of output files:
Context
Trying to run hhsuitedb.py as part of this code (line 149).
Your Environment
The hhsuite version I installed was compiled from source by cloning from github on October 27. Running on Ubuntu 20.04.3 LTS System memory - MemTotal: 16151700 kB