soedinglab / hh-suite

Remote protein homology detection suite.
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3019-7
GNU General Public License v3.0
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alignment file error #302

Open sanaamir119 opened 3 years ago

sanaamir119 commented 3 years ago

:exclamation: Make to check out our User Guide.

Expected Behavior

hhmakemodel.py is giving the not giving correct alignment file.

"Error while using alignment file generated by hhmakemodel.py" return f(self.modpt, io.modpt, self.env.libs.modpt, eqvdst) _modeller.ModellerError: rdmmcif_303E> No atoms were read from the specified input MMCIF file, since the starting residue number and/or chain id in MODEL_SEGMENT (or the alignment file header) was not found; requested starting position: residue number " 1", chain " A"; atom file name: 2G0D.cif

Steps to Reproduce (for bugs)

while I used TvLDH fasta given the correct alignment , and modeller was able to model the structure

HH-suite Output (for bugs)

Please make sure to post the complete output of the tool you called. Please use gist.github.com.

Context

\While I have taken other sequence the alignment file is incorrect.

Your Environment

Include as many relevant details about the environment you experienced the issue in.

sanaamir119 commented 3 years ago

I am running the hhpred standalone and trying to model the protein using ,modeller. But I think there is issue in generating alignment file