soedinglab / hh-suite

Remote protein homology detection suite.
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3019-7
GNU General Public License v3.0
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A question about searching time #331

Open YiningWang2 opened 1 year ago

YiningWang2 commented 1 year ago

Hello, recently i am curious about the search time when i use hhblits to generate MSAs. The same BFD I used, but i fount different sequence has quite different search time. And the difference is not strongly correlative with the sequence length. I want to know what cause different speed, can you help me?