Does the template searching result contain query sequence's structure or not?

[psp3dcg]

Context

If the template database (such as pdb100) contains the structure of the query sequence, will "hhsearch" return the structure information of the query sequence as a part of template? If so, how to remove the structural information of the query sequence itself from the template? Thank U~

Your Environment

Include as many relevant details about the environment you experienced the issue in.

• Version/Git commit used: hhsuite 3.2.0
• Server specifications (especially CPU support for AVX2/SSE and amount of system memory): Inter i7 10700, 64GB memory
• Operating system and version: Ubuntu 18.04

[psp3dcg]

I usually use MSA generated by hhblits as input for hhsearch.

[milot-mirdita]

We add secondary structure information to the PDB70. You can disable secondary structure information by passing -ssm 0 to HHblits/HHsearch.

[milot-mirdita]

The PDB100 I created for ColabFold does not contain secondary structure information.