My question:
Can and NULL in the generated hhm file be considered to mean the same thing? Can I replace with the corresponding NULL value in each column? Your reply is very urgent.Thank you very much.
Part of the generated hhm file
#
NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
HMM A C D E F G H I K L M N P Q R S T V W Y
……
……
A 53 3804 6047 3909 4101 5190 3304 5880 5674 4475 4428 5009 3773 4662 4265 4139 3802 3149 3643 * 6068 53
My steps: conda install -c conda-forge -c bioconda hhsuite hhblits -i A.fasta -d pdb70 -oa3m A.a3m hhmake -i A.a3m -o A.hhm
My question: Can and NULL in the generated hhm file be considered to mean the same thing? Can I replace with the corresponding NULL value in each column? Your reply is very urgent.Thank you very much.
Part of the generated hhm file # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665
HMM A C D E F G H I K L M N P Q R S T V W Y
…… …… A 53 3804 6047 3909 4101 5190 3304 5880 5674 4475 4428 5009 3773 4662 4265 4139 3802 3149 3643 * 6068 53