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soedinglab / metaeuk

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
GNU General Public License v3.0
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Any tutorials or example of end to end workflows? #30

Closed jolespin closed 3 years ago

jolespin commented 3 years ago

I'm working on an institute wide pipeline for JCVI and want to incorporate this into it.

Do you have any tutorials on downloading the database, a test data set, and a step by step process on getting the end results?

Also maybe recommendations on which database to use for what type of dataset?

I started going through the workflow on the wiki but stopped at the first step when I realized I needed a database. Started downloading the databases but wasn't sure which one would be the best or what was in them. For example, does the NR database have all the proteins from NR, all eukaryotic, or just all protists.

jolespin commented 3 years ago

Nvm, taking a deeper dive into everything and I think I've figured it out. Will reopen if I still have issues.