search

soedinglab / plass

sensitive and precise assembly of short sequencing reads
https://plass.mmseqs.com
GNU General Public License v3.0
132 stars 14 forks source link

Alternative codon table #45

Closed aabaricalla closed 3 months ago

aabaricalla commented 3 months ago

I recently found this tool and I'll try as soon as possible. I'm trying to reconstruct a mitochondrial genome without closely related specie, so I think this approach could be a better way to do it, but I'm concern about the codon table. There is any chance to use the codon 5 table (invertebrate)?

milot-mirdita commented 3 months ago

You should be able to use --use-all-table-starts 1 --translation-table 5 , however, we have not extensively tested alternative codon tables.

aabaricalla commented 3 months ago

Thanks a lot!! I'll be sending you my test results ASAP.