soft-matter trackpy issues

soft-matter / trackpy

Python particle tracking toolkit

http://soft-matter.github.io/trackpy

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issues

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Fix plot_traj(colorby='frame') for intermittent particles.

#777 T0T0R opened 2 weeks ago
0
`memory` not stable between runs

#776 freemansw1 opened 4 weeks ago
0
Error in walkthrough guide during particle filtering

#775 imruffin opened 2 months ago
0
Fix Issue #772, alternative that doesn't affect imsd() but still correctly calculates weighted average for emsd()

#774 vivarose opened 3 months ago
0
Fix issue #772, Incorrect zeros included in emsd average when particles are dropped

#773 vivarose opened 3 months ago
2
Incorrect zeros included in emsd average when particles are dropped

#772 vivarose opened 3 months ago
1
trackpy.batch only works with processes = 1

#771 ggomes-altos opened 3 months ago
2
MNT: numpy v2.0 compatibility

#770 nkeim closed 4 months ago
0
track

#769 iboykaka closed 4 months ago
0
Trackpy incompatible with Numpy 2.0

#768 SiFroehl opened 4 months ago
3
MNT: Avoid passing argument to plt.gca()

#767 nkeim closed 5 months ago
0
RLS: Add release notes for v0.6.3

#766 nkeim closed 5 months ago
0
Release v0.6.3

#765 nkeim closed 5 months ago
0
[Question] How to add optional arguments in after_locate function in tp.batch

#764 JulietteSavoye closed 5 months ago
1
Fix conda workflow

#763 nkeim closed 5 months ago
1
[Enhancement] Allowing possibility to convert raw image to `uint16`

#762 jacopoabramo opened 7 months ago
0
[Question] methods for initial estimation of `minmass`

#761 jacopoabramo opened 7 months ago
1
Locate only within specific ROI

#760 PabloAu closed 6 months ago
2
`plot_traj3d` throws error

#759 jacopoabramo closed 5 months ago
0
fix issue #757

#758 hz-xiaxz closed 5 months ago
2
Error in trackpy.emsd() function: TypeError: mean() got an unexpected keyword argument 'level'

#757 Jelle111 closed 5 months ago
5
tp.batch does not perform batch correctly (all frames output as 0)

#756 joaomamede opened 8 months ago
3
TST: Need to replace a GitHub action

#755 nkeim closed 5 months ago
0
DOC: Remove Python version from installation.rst

#754 nkeim closed 9 months ago
0
Old Python version in installation instructions

#753 nkeim closed 9 months ago
0
Use pims.as_grey instead of image[:, :, 1] in walkthrough tutorial.

#752 kevinsmia1939 opened 9 months ago
0
Linking using multiple HDF5 files.

#751 wheelern closed 9 months ago
1
Tutorial shows problem using latest pandas

#750 jmcclimo2003 closed 5 months ago
2
RLS: Release notes for 0.6.2

#749 nkeim closed 9 months ago
0
Release v0.6.2

#748 nkeim closed 9 months ago
5
[Done] Test with newer Python, deprecation fixes, drop Py3.7 support

#747 caspervdw closed 10 months ago
2
level keyword argument was removed in pandas>2.0

#746 Pawelbure closed 10 months ago
1
link_df_iter giving TypeError when using pd.concat?

#745 zimengwu opened 11 months ago
0
TST: Weird dtype switching on Windows

#744 nkeim closed 10 months ago
2
MNT: scipy, Pandas, sklearn compatibility

#743 nkeim closed 12 months ago
2
FIX #738

#742 vivarose closed 1 year ago
2
Working on a napari-trackpy plugin

#741 joaomamede opened 1 year ago
2
Update motion.py to fix TypeError: mean() got an unexpected keyword argument 'level' on emsd function

#740 marcocaggioni closed 10 months ago
0
BUG in utils.py (default_pos_columns)

#739 VeraMTitze closed 10 months ago
0
tp.emsd TypeError: mean() got an unexpected keyword argument 'level'

#738 susuwataridib closed 1 year ago
7
object has no attribute 'long_name' (when inspecting 'frame')

#737 rodrigo-j-goncalves opened 1 year ago
2
How to find number of pixels in blob

#736 zbenmamoun opened 1 year ago
0
Fix for issue #734

#735 kevin-duclos closed 9 months ago
5
Pandas ValueError when calling subtract_drift

#734 kevin-duclos opened 1 year ago
1
Detector based on the sqrt Airy disk function to localize iSCAT PSFs

#733 PabloAu opened 1 year ago
0
The number of trajectories is different from the number of unique particle IDs

#732 lxfhfut closed 1 year ago
2
Is the particle size squared a suitable measure of area?

#731 zbenmamoun opened 1 year ago
0
pandas 2.0 breaks emsd calculation

#730 yichechang closed 1 year ago
2
How do you save the images TrackPy creates for reports

#729 Rory235 opened 1 year ago
5
Error in eccentricity calculation

#728 AlexShkarin opened 1 year ago
0