More notebook updates - Githubissues

danielballan commented 8 years ago

Changes mainly in three categories:

Add occasional missing imports that seem to be in both my and @nkeim's IPython profiles (numpy, pandas, pyplot).
Switch from tp.<ReaderClass> to pims.<Reader Class>.
Use matplotlib notebook (except for prediction.ipynb, whose plotting function seems to be hitting a bug or weirdness in the notebook backend -- @tacaswell suggested a workaround, but I'll wait for matplotlib)

I ran and updated every notebook except:

walkthrough.ipynb -- already has been updated
tracking-3d.ipynb -- see https://github.com/soft-matter/pims/issues/198
custom-feature-detection.ipynb -- somewhat recently updated; I confirmed that it still runs

danielballan commented 8 years ago

Other changes I forgot to note:

nkeim commented 8 years ago

This is great!! I was actually preparing a PR to fix just the adaptive search notebook, but you went and did them all. Thanks.

Merging now, to make it easier to discover any issues before v0.3 is released.

soft-matter / trackpy-examples