Transition to Github Actions

soft-matter / trackpy

Python particle tracking toolkit

http://soft-matter.github.io/trackpy

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Transition to Github Actions #640

Closed caspervdw closed 3 years ago

caspervdw commented 3 years ago

It is not yet building on this repository, I think because it is not yet on master. You can follow the builds on https://github.com/caspervdw/trackpy/actions.

Some remarks:

There are two actions: Pip (Linux) and Conda (Win, MacOS, Linux)
For linux I did a list Py3.5-now with typical versions of packages for each year
For Conda I did Py3.8 with the latest versions of all dependencies
I ditched appveyor, but kept Travis for the doc build
earlier numba + llvmlite versions require you to compile LLVM when using Pip. We can't test these versions anymore.
pytables is named "tables" on PyPI
Tests are still failing, but that is a work in progress that will not be solved in this PR -> #640, #642, #643, #644

caspervdw commented 3 years ago

@rbnvrw Care to have a look at the test failures? I think you mainly worked on this code:

trackpy/tests/locate/test_brightfield_ring.py ..FFFF....FFFFFFFFFFFFFF   [100%]

caspervdw commented 3 years ago

Further failures:

in trackpy/tests/test_feature.py: failures related to #641
in trackpy/tests/test_motion.py: disabled weird test in #641

in trackpy/tests/test_feature_saving.py:

E           ValueError: PyTables [3.6.1] no longer supports opening multiple files
E           even in read-only mode on this HDF5 version [1.8.5-patch1]. You can accept this
E           and not open the same file multiple times at once,
E           upgrade the HDF5 version, or downgrade to PyTables 3.0.0 which allows
E           files to be opened multiple times at once

trackpy.tests.test_leastsq only on the Py39, numpy 1.19, scipy 1.5 environment: --> #641

caspervdw commented 3 years ago

Everything seems to be working (except for some test failures) Merging.