Update core - Githubissues

This PR contains the following updates:

Package	Change	Type	Update
dvc	`==3.15.3` -> `==3.21.1`		minor
imageio	`==2.31.1` -> `==2.31.3`		patch
iterative/dvc	`3.15.3` -> `3.21.1`	repository	minor
loguru (changelog)	`==0.7.0` -> `==0.7.2`		patch
matplotlib (source)	`==3.7.2` -> `==3.8.0`		minor
nbconvert	`==7.7.4` -> `==7.8.0`		minor
pillow (source, changelog)	`==10.0.0` -> `==10.0.1`		patch
ploomber-engine	`==0.0.30` -> `==0.0.31`		patch
pytz	`==2023.3` -> `==2023.3.post1`		patch
scipy (source)	`==1.11.1` -> `==1.11.2`		patch
sphinxcontrib-bibtex	`==2.5.0` -> `==2.6.1`		minor
xarray	`==2023.7.0` -> `==2023.8.0`		minor

Note: The pre-commit manager in Renovate is not supported by the pre-commit maintainers or community. Please do not report any problems there, instead create a Discussion in the Renovate repository if you have any questions.

Release Notes

iterative/dvc (dvc)

### [`v3.21.1`](https://togithub.com/iterative/dvc/releases/tag/3.21.1) [Compare Source](https://togithub.com/iterative/dvc/compare/3.20.0...3.21.1) #### What's Changed ##### Other Changes - api.DVCFileSystem: fix fsspec compliance by [@pmrowla](https://togithub.com/pmrowla) in [https://github.com/iterative/dvc/pull/9951](https://togithub.com/iterative/dvc/pull/9951) **Full Changelog**: https://github.com/iterative/dvc/compare/3.20.0...3.21.1 ### [`v3.20.0`](https://togithub.com/iterative/dvc/releases/tag/3.20.0) [Compare Source](https://togithub.com/iterative/dvc/compare/3.19.0...3.20.0) ##### What's Changed ##### 🚀 New Features and Enhancements - import: Expose `--force` flag by [@daavoo](https://togithub.com/daavoo) in [https://github.com/iterative/dvc/pull/9927](https://togithub.com/iterative/dvc/pull/9927) - params/metrics: cache remote files by [@skshetry](https://togithub.com/skshetry) in [https://github.com/iterative/dvc/pull/9932](https://togithub.com/iterative/dvc/pull/9932) - Migrate from PyPI tokens to Trusted Publishers by [@0x2b3bfa0](https://togithub.com/0x2b3bfa0) in [https://github.com/iterative/dvc/pull/9933](https://togithub.com/iterative/dvc/pull/9933) - Fix Repo instantiation error when using fsspec chaining API by [@bilelomrani1](https://togithub.com/bilelomrani1) in [https://github.com/iterative/dvc/pull/9903](https://togithub.com/iterative/dvc/pull/9903) - metrics/params: support reading from cached files and directories, use repo-relative path consistently by [@skshetry](https://togithub.com/skshetry) in [https://github.com/iterative/dvc/pull/9909](https://togithub.com/iterative/dvc/pull/9909) - dvcfs: add tests for fsid by [@efiop](https://togithub.com/efiop) in [https://github.com/iterative/dvc/pull/9934](https://togithub.com/iterative/dvc/pull/9934) - make exp run --dry imply --temp by [@dberenbaum](https://togithub.com/dberenbaum) in [https://github.com/iterative/dvc/pull/9929](https://togithub.com/iterative/dvc/pull/9929) - merge plot ids across dvc.yaml files by [@dberenbaum](https://togithub.com/dberenbaum) in [https://github.com/iterative/dvc/pull/9898](https://togithub.com/iterative/dvc/pull/9898) ##### 🐛 Bug Fixes - repo: use is_repo_import to check for imports in `outs_graph` by [@pmrowla](https://togithub.com/pmrowla) in [https://github.com/iterative/dvc/pull/9925](https://togithub.com/iterative/dvc/pull/9925) ##### New Contributors - [@bilelomrani1](https://togithub.com/bilelomrani1) made their first contribution in [https://github.com/iterative/dvc/pull/9903](https://togithub.com/iterative/dvc/pull/9903) **Full Changelog**: https://github.com/iterative/dvc/compare/3.19.0...3.20.0 ### [`v3.19.0`](https://togithub.com/iterative/dvc/releases/tag/3.19.0) [Compare Source](https://togithub.com/iterative/dvc/compare/3.18.0...3.19.0) #### What's Changed ##### 🚀 New Features and Enhancements - dvcfs: add basic fsid by [@efiop](https://togithub.com/efiop) in [https://github.com/iterative/dvc/pull/9923](https://togithub.com/iterative/dvc/pull/9923) - checkout: Expose `--allow-missing` arg. by [@daavoo](https://togithub.com/daavoo) in [https://github.com/iterative/dvc/pull/9919](https://togithub.com/iterative/dvc/pull/9919) ##### 🐛 Bug Fixes - exp show: drop internal legacy checkpoint support by [@pmrowla](https://togithub.com/pmrowla) in [https://github.com/iterative/dvc/pull/9906](https://togithub.com/iterative/dvc/pull/9906) - stage.run: always set DVC_ROOT env var by [@pmrowla](https://togithub.com/pmrowla) in [https://github.com/iterative/dvc/pull/9918](https://togithub.com/iterative/dvc/pull/9918) - Typo [dvc/rwlock.py#107](https://togithub.com/dvc/rwlock.py/issues/107) Remove -> Removed by [@thisiswhereitype](https://togithub.com/thisiswhereitype) in [https://github.com/iterative/dvc/pull/9921](https://togithub.com/iterative/dvc/pull/9921) #### New Contributors - [@thisiswhereitype](https://togithub.com/thisiswhereitype) made their first contribution in [https://github.com/iterative/dvc/pull/9921](https://togithub.com/iterative/dvc/pull/9921) **Full Changelog**: https://github.com/iterative/dvc/compare/3.18.0...3.19.0 ### [`v3.18.0`](https://togithub.com/iterative/dvc/releases/tag/3.18.0) [Compare Source](https://togithub.com/iterative/dvc/compare/3.17.0...3.18.0) #### What's Changed ##### 🚀 New Features and Enhancements - ls-url/get-url/import-url: introduce --fs-config by [@efiop](https://togithub.com/efiop) in [https://github.com/iterative/dvc/pull/9888](https://togithub.com/iterative/dvc/pull/9888) - move: Alias mv to move by [@BradyJ27](https://togithub.com/BradyJ27) in [https://github.com/iterative/dvc/pull/9905](https://togithub.com/iterative/dvc/pull/9905) ##### 🐛 Bug Fixes - cli: utils: DictAction: limit split to 2 elements by [@efiop](https://togithub.com/efiop) in [https://github.com/iterative/dvc/pull/9887](https://togithub.com/iterative/dvc/pull/9887) - exp run: track files for skipped/run-cached stages by [@pmrowla](https://togithub.com/pmrowla) in [https://github.com/iterative/dvc/pull/9889](https://togithub.com/iterative/dvc/pull/9889) #### New Contributors - [@BradyJ27](https://togithub.com/BradyJ27) made their first contribution in [https://github.com/iterative/dvc/pull/9905](https://togithub.com/iterative/dvc/pull/9905) **Full Changelog**: https://github.com/iterative/dvc/compare/3.17.0...3.18.0 ### [`v3.17.0`](https://togithub.com/iterative/dvc/releases/tag/3.17.0) [Compare Source](https://togithub.com/iterative/dvc/compare/3.16.0...3.17.0) #### What's Changed ##### 🚀 New Features and Enhancements - exp show: show metrics that include separator by [@dberenbaum](https://togithub.com/dberenbaum) in [https://github.com/iterative/dvc/pull/9819](https://togithub.com/iterative/dvc/pull/9819) ##### 🐛 Bug Fixes - update: preserve `def_path` for version-aware import update by [@pmrowla](https://togithub.com/pmrowla) in [https://github.com/iterative/dvc/pull/9875](https://togithub.com/iterative/dvc/pull/9875) - repo: don't try to gitignore custom cache locations by [@efiop](https://togithub.com/efiop) in [https://github.com/iterative/dvc/pull/9883](https://togithub.com/iterative/dvc/pull/9883) ##### 🔨 Maintenance - build(deps-dev): bump dvc-oss from 2.19 to 2.20.0 by [@dependabot](https://togithub.com/dependabot) in [https://github.com/iterative/dvc/pull/9870](https://togithub.com/iterative/dvc/pull/9870) - build(deps): bump rtCamp/action-slack-notify from 2.2.0 to 2.2.1 by [@dependabot](https://togithub.com/dependabot) in [https://github.com/iterative/dvc/pull/9874](https://togithub.com/iterative/dvc/pull/9874) ##### Other Changes - deps: unpin dvc-oss by [@skshetry](https://togithub.com/skshetry) in [https://github.com/iterative/dvc/pull/9871](https://togithub.com/iterative/dvc/pull/9871) - Rename partial add/remove benchmarks by [@dberenbaum](https://togithub.com/dberenbaum) in [https://github.com/iterative/dvc/pull/9868](https://togithub.com/iterative/dvc/pull/9868) - update msg for multiple overlapping outputs by [@dberenbaum](https://togithub.com/dberenbaum) in [https://github.com/iterative/dvc/pull/9862](https://togithub.com/iterative/dvc/pull/9862) - Add DVC_ROOT env var into queued experiment runs by [@mattseddon](https://togithub.com/mattseddon) in [https://github.com/iterative/dvc/pull/9879](https://togithub.com/iterative/dvc/pull/9879) - Remove dead Stage method by [@mattseddon](https://togithub.com/mattseddon) in [https://github.com/iterative/dvc/pull/9881](https://togithub.com/iterative/dvc/pull/9881) - site_cache_dir: add salt to token by [@efiop](https://togithub.com/efiop) in [https://github.com/iterative/dvc/pull/9884](https://togithub.com/iterative/dvc/pull/9884) **Full Changelog**: https://github.com/iterative/dvc/compare/3.16.0...3.17.0 ### [`v3.16.0`](https://togithub.com/iterative/dvc/releases/tag/3.16.0) [Compare Source](https://togithub.com/iterative/dvc/compare/3.15.3...3.16.0) #### What's Changed ##### 🚀 New Features and Enhancements - ls/ls-url: introduce --size by [@efiop](https://togithub.com/efiop) in [https://github.com/iterative/dvc/pull/9854](https://togithub.com/iterative/dvc/pull/9854) ##### 🐛 Bug Fixes - dep: repo: handle dict as config by [@efiop](https://togithub.com/efiop) in [https://github.com/iterative/dvc/pull/9853](https://togithub.com/iterative/dvc/pull/9853) - import: set core.remote when both --remote and --remote-config are specified by [@efiop](https://togithub.com/efiop) in [https://github.com/iterative/dvc/pull/9855](https://togithub.com/iterative/dvc/pull/9855) ##### 🔨 Maintenance - build(deps-dev): bump mypy from 1.4.1 to 1.5.1 by [@dependabot](https://togithub.com/dependabot) in [https://github.com/iterative/dvc/pull/9852](https://togithub.com/iterative/dvc/pull/9852) - build(deps-dev): update pytest-docker requirement from <2,>=1 to >=1,<3 by [@dependabot](https://togithub.com/dependabot) in [https://github.com/iterative/dvc/pull/9748](https://togithub.com/iterative/dvc/pull/9748) ##### Other Changes - plots: fix caching of legacy format by [@skshetry](https://togithub.com/skshetry) in [https://github.com/iterative/dvc/pull/9849](https://togithub.com/iterative/dvc/pull/9849) - exp: make run/save less noisy by [@dberenbaum](https://togithub.com/dberenbaum) in [https://github.com/iterative/dvc/pull/9846](https://togithub.com/iterative/dvc/pull/9846) - tests: simplify test parametrization by [@skshetry](https://togithub.com/skshetry) in [https://github.com/iterative/dvc/pull/9858](https://togithub.com/iterative/dvc/pull/9858) - assert that the test is getting parametrized correctly by [@skshetry](https://togithub.com/skshetry) in [https://github.com/iterative/dvc/pull/9859](https://togithub.com/iterative/dvc/pull/9859) - fix type hints by [@skshetry](https://togithub.com/skshetry) in [https://github.com/iterative/dvc/pull/9863](https://togithub.com/iterative/dvc/pull/9863) **Full Changelog**: https://github.com/iterative/dvc/compare/3.15.3...3.16.0

imageio/imageio (imageio)

### [`v2.31.3`](https://togithub.com/imageio/imageio/blob/HEAD/CHANGELOG.md#v2313-2023-09-04) [Compare Source](https://togithub.com/imageio/imageio/compare/v2.31.2...v2.31.3) ##### Fix - Refactor resolution metadata reading for TIFF and avoid failing on missing data ([#1031](https://togithub.com/imageio/imageio/issues/1031)) ([`6cd3a42`](https://togithub.com/imageio/imageio/commit/6cd3a42c7f4371aec61e835d0b3d82fb2e40159f)) ##### Other - Update readthedocs.yaml ([#1035](https://togithub.com/imageio/imageio/issues/1035)) ([`b0baa1d`](https://togithub.com/imageio/imageio/commit/b0baa1da25452fd5335261e87e577fdde90f463a)) - Deprecate Python 3.7 support ([#1033](https://togithub.com/imageio/imageio/issues/1033)) ([`61a1e15`](https://togithub.com/imageio/imageio/commit/61a1e15b3b98cb418b5093c1dafdfc7c0d675d79)) ### [`v2.31.2`](https://togithub.com/imageio/imageio/blob/HEAD/CHANGELOG.md#v2312-2023-08-26) [Compare Source](https://togithub.com/imageio/imageio/compare/v2.31.1...v2.31.2) ##### Fix - Add bytes to ImageResource typehints ([#1026](https://togithub.com/imageio/imageio/issues/1026)) ([`cc35f33`](https://togithub.com/imageio/imageio/commit/cc35f33d813d340f2532414253171f16fff7a44c)) ##### Other - Remove deprecations in CD ([#1027](https://togithub.com/imageio/imageio/issues/1027)) ([`d632ea9`](https://togithub.com/imageio/imageio/commit/d632ea93f306f77fee79fd50f0db0b919168e5c4)) - Fix typo in README.md ([#1029](https://togithub.com/imageio/imageio/issues/1029)) ([`86dcba9`](https://togithub.com/imageio/imageio/commit/86dcba90d23ba858a6fafb1c26f9f6b6eff19210)) - Fix several typos in the docs and source code comments ([#1023](https://togithub.com/imageio/imageio/issues/1023)) ([`2cdf563`](https://togithub.com/imageio/imageio/commit/2cdf5632622e00adc8edfadb27dda0b4880e50ba)) - Add migration note for format kwarg ([#1019](https://togithub.com/imageio/imageio/issues/1019)) ([`3dd6574`](https://togithub.com/imageio/imageio/commit/3dd6574f1a5e52c8a73419d29bbccf6f9e180c23))

Delgan/loguru (loguru)

### [`v0.7.2`](https://togithub.com/Delgan/loguru/blob/HEAD/CHANGELOG.rst#072-2023-09-11) [Compare Source](https://togithub.com/Delgan/loguru/compare/0.7.1...0.7.2) \===================== - Add support for formatting of `ExceptionGroup` errors (`#805 `\_). - Fix possible `RuntimeError` when using `multiprocessing.set_start_method()` after importing the `logger` (`#974 `\_) - Fix formatting of possible `__notes__` attached to an `Exception` (`#980 `\_). ### [`v0.7.1`](https://togithub.com/Delgan/loguru/blob/HEAD/CHANGELOG.rst#071-2023-09-04) [Compare Source](https://togithub.com/Delgan/loguru/compare/0.7.0...0.7.1) \===================== - Add a new `context` optional argument to `logger.add()` specifying `multiprocessing` context (like `"spawn"` or `"fork"`) to be used internally instead of the default one (`#851 `\_). - Add support for true colors on Windows using ANSI/VT console when available (`#934 `*, thanks `@tunaflsh `*). - Fix possible deadlock when calling `logger.complete()` with concurrent logging of an asynchronous sink (`#906 `\_). - Fix file possibly rotating too early or too late when re-starting an application around midnight (`#894 `\_). - Fix inverted `""` and `""` color tags (`#943 `*, thanks `@tunaflsh `*). - Fix possible untraceable errors raised when logging non-unpicklable `Exception` instances while using `enqueue=True` (`#329 `\_). - Fix possible errors raised when logging non-picklable `Exception` instances while using `enqueue=True` (`#342 `*, thanks `@ncoudene `*). - Fix missing seconds and microseconds when formatting timezone offset that requires such accuracy (`#961 `\_). - Raise `ValueError` if an attempt to use nanosecond precision for time formatting is detected (`#855 `\_).

matplotlib/matplotlib (matplotlib)
### [`v3.8.0`](https://togithub.com/matplotlib/matplotlib/releases/tag/v3.8.0): REL: v3.8.0 [Compare Source](https://togithub.com/matplotlib/matplotlib/compare/v3.7.3...v3.8.0) REL: v3.8.0 Highlights of this release include: - Type hints for most public APIs - Many improvements to Mathtext - Addition of `\boldsymbol` command - Additional sizable delimiters - Documentation improvements - `\substack` command - `\middle` delimitier - `\mathbfit` for bold italic text - 3D plotting improvements - Specify tick/axis label positions - Improved text for coordinates in interactive sessions - Ability to share view angles - New plotting method `ecdf` (empirical cumulative distribution function) ### [`v3.7.3`](https://togithub.com/matplotlib/matplotlib/releases/tag/v3.7.3): REL: v3.7.3 [Compare Source](https://togithub.com/matplotlib/matplotlib/compare/v3.7.2...v3.7.3) This is the third bugfix release of the 3.7.x series. This release contains several bug-fixes and adjustments: - Add Python 3.12 wheels - Update the license for the bundled colorbrewer colormap data - Fix Cairo backend when using cairocffi - Fix axes_grid1 inset axes with `bbox_inches=tight` - Fix bugs in `Path3DCollection` / `Poly3DCollection` constructors - Fix setting array labelcolor on Tick - Improve compatibility with latest NumPy - Stop warning when calling `tight_layout` multiple times

python-pillow/Pillow (pillow)
### [`v10.0.1`](https://togithub.com/python-pillow/Pillow/blob/HEAD/CHANGES.rst#1001-2023-09-15) [Compare Source](https://togithub.com/python-pillow/Pillow/compare/10.0.0...10.0.1) - Updated libwebp to 1.3.2 [#7395](https://togithub.com/python-pillow/Pillow/issues/7395) \[radarhere] - Updated zlib to 1.3 [#7344](https://togithub.com/python-pillow/Pillow/issues/7344) \[radarhere]

scipy/scipy (scipy)
### [`v1.11.2`](https://togithub.com/scipy/scipy/releases/tag/v1.11.2): SciPy 1.11.2 [Compare Source](https://togithub.com/scipy/scipy/compare/v1.11.1...v1.11.2) # SciPy 1.11.2 Release Notes SciPy `1.11.2` is a bug-fix release with no new features compared to `1.11.1`. Python `3.12` and musllinux wheels are provided with this release. # Authors - Name (commits) - Evgeni Burovski (2) - CJ Carey (3) - Dieter Werthmüller (1) - elbarso (1) + - Ralf Gommers (2) - Matt Haberland (1) - jokasimr (1) + - Thilo Leitzbach (1) + - LemonBoy (1) + - Ellie Litwack (2) + - Sturla Molden (1) - Andrew Nelson (5) - Tyler Reddy (39) - Daniel Schmitz (6) - Dan Schult (2) - Albert Steppi (1) - Matus Valo (1) - Stefan van der Walt (1) A total of 18 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete.

mcmtroffaes/sphinxcontrib-bibtex (sphinxcontrib-bibtex)
### [`v2.6.1`](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/blob/HEAD/CHANGELOG.rst#261-27-August-2023) [Compare Source](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/compare/2.6.0...2.6.1) - The `:cite:alp:` role in the super style now also suppresses the sup tag in addition to the brackets, to make it easier to apply the necessary formatting around the citation. ### [`v2.6.0`](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/blob/HEAD/CHANGELOG.rst#260-24-August-2023) [Compare Source](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/compare/2.5.0...2.6.0) - Pre- and post-text in citations are now supported for the author_year, label, and super referencing styles. The syntax is \`\`:cite:p:\`{pre-text}key{post-text}\`\`\` (requested by RobertoBagnara, see issue [#288](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/issues/288) and pull request [#316](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/issues/316)). Refer to the documentation for more details. - New alternative style citations are now supported for the author_year, label, and super parenthetical referencing styles, which are identical to parenthetical citations but without the brackets. The syntax is \`\`:cite:alp:\`key\`\`\` (requested by davidorme, see pull request [#316](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/issues/316)). Refer to the documentation for more details. - Exclude docutils 0.18 and 0.19 to fix generation of a spurious div tag in the html builder (see issues [#330](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/issues/330), [#329](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/issues/329), [#323](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/issues/323), [#322](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/issues/322), [#309](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/issues/309)). - Add test for running the extension on Cython modules (see issue [#308](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/issues/308)). - Add test for running the extension with autoapi (see issue [#319](https://togithub.com/mcmtroffaes/sphinxcontrib-bibtex/issues/319)). - Sphinx versions 2.x (and lower) are no longer supported. New minimum required version of Sphinx is 3.5. - Running pytest without arguments will now by default skip all marked tests that require additional dependencies (currently numpydoc, rinohtype, and cython). - Fix encoding issues when running tests on Windows. - Python 3.6 is EOL and is therefore no longer officially supported.

pydata/xarray (xarray)
### [`v2023.8.0`](https://togithub.com/pydata/xarray/compare/v2023.07.0...v2023.08.0) [Compare Source](https://togithub.com/pydata/xarray/compare/v2023.07.0...v2023.08.0)

Configuration

📅 Schedule: Branch creation - "on the 16th day of the month" (UTC), Automerge - At any time (no schedule defined).

🚦 Automerge: Disabled by config. Please merge this manually once you are satisfied.

♻ Rebasing: Whenever PR becomes conflicted, or you tick the rebase/retry checkbox.

👻 Immortal: This PR will be recreated if closed unmerged. Get config help if that's undesired.

[ ] If you want to rebase/retry this PR, check this box

This PR has been generated by Mend Renovate. View repository job log here.

softboiler / boilercv

Update core #113

Release Notes

Configuration

Codecov Report