Closed Lyang556 closed 1 year ago
The --- represents other amino acids and the / represents the chain break
That shouldn't be the case. Can you share an example input you used?
@sokrypton Here is an example input. contigs:10-17/A1008-1031/30-38/0 C22-83 pdb:5zng copies:1 initial_guess:True
The other parameters in the Colab RFdiffusion are default.
Thanks for reporting the bug! I've fixed this in the updated version. Tell me if you still see any issues
I am trying to use RFdiffusion in ColabDesign for protein design, and I found that the sequence in design.fasta is different from the sequence in best.pdb, is this normal? Below is one of my results
design.fasta: TYKVVALFTG-----/---- best.pdb: TYKVVALFTGC-----/----