Problem in designability_test.py

[suknamgoong1970]

I tried to design binder using diffusion.ipynb colab. But I experienced error like this.

{'pdb':'outputs/Actinbindinger_i5jed_0.pdb','loc':'outputs/Actinbindinger_i5jed','contigs':'A5-39/A51-375:150-150','copies':1,'num_seqs':8,'initial_guess':True,'use_multimer':False,'num_recycles':3,'rm_aa':'C','num_designs':1} protocol=binder running proteinMPNN... running AlphaFold... Traceback (most recent call last): File "/content/colabdesign/rf/designability_test.py", line 198, in main(sys.argv[1:]) File "/content/colabdesign/rf/designability_test.py", line 180, in main sub_seq_divided = "".join(np.insert(list(sub_seq),np.cumsum(af_model._lengths[:-1]),"/")) File "<__array_function__ internals>", line 180, in insert File "/usr/local/lib/python3.9/dist-packages/numpy/lib/function_base.py", line 5280, in insert raise IndexError(f"index {obj} is out of bounds for axis {axis} " IndexError: index [360] is out of bounds for axis 0 with size 150 CPU times: user 348 ms, sys: 86.4 ms, total: 434 ms Wall time: 59.6 s

My parameters are as followed: Contig : A:100 PDB:1J6Z HOTSPOTS : A143,A148,A341,A345,A349

num_seqs:8 initial_guess:True num_recycles:3

Similar error did not occurred a few days ago..

[sokrypton]

Thanks for the report. I've pushed a fix! Can you try again?

[suknamgoong1970]

Now it seems to work! Thanks