Open ajasja opened 4 weeks ago
The Fold Conditioning notebook seems to be broken, both in main and beta. I guess the diffusion fails for some reason and then the output can't be displayed.
Just running everything with the default inputs.
> --------------------------------------------------------------------------- > FileNotFoundError Traceback (most recent call last) > <timed exec> in <module> > > [<ipython-input-1-4c4e816c817e>](https://localhost:8080/#) in diffuse(self, iterations, mask_loops, mask_contacts, extra_cmd) > 472 self.cmd_str = " ".join(cmd) > 473 self._run(self.cmd_str, iterations) > --> 474 self._plot_pdb(self.buttons["freeze"]) > 475 > 476 def _run(self, command, steps, num_designs=1): > > [<ipython-input-1-4c4e816c817e>](https://localhost:8080/#) in _plot_pdb(self, change) > 405 else: > 406 pdb = f"outputs/{self.path}_0.pdb" > --> 407 pdb_str = open(pdb,'r').read() > 408 view.addModel(pdb_str,'pdb') > 409 if self._plot["color"] == "SSE": > > FileNotFoundError: [Errno 2] No such file or directory: 'outputs/test_0.pdb'
The Fold Conditioning notebook seems to be broken, both in main and beta. I guess the diffusion fails for some reason and then the output can't be displayed.
Just running everything with the default inputs.![image](https://github.com/sokrypton/ColabDesign/assets/19926/fb2a947f-cf65-4983-883d-63e6d43c585b)