sokrypton / ColabDesign

Making Protein Design accessible to all via Google Colab!
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The Fold Conditioning notebook seems to be broken #177

Open ajasja opened 4 weeks ago

ajasja commented 4 weeks ago

The Fold Conditioning notebook seems to be broken, both in main and beta. I guess the diffusion fails for some reason and then the output can't be displayed.

Just running everything with the default inputs. image

> ---------------------------------------------------------------------------
> FileNotFoundError                         Traceback (most recent call last)
> <timed exec> in <module>
> 
> [<ipython-input-1-4c4e816c817e>](https://localhost:8080/#) in diffuse(self, iterations, mask_loops, mask_contacts, extra_cmd)
>     472       self.cmd_str = " ".join(cmd)
>     473       self._run(self.cmd_str, iterations)
> --> 474     self._plot_pdb(self.buttons["freeze"])
>     475 
>     476   def _run(self, command, steps, num_designs=1):
> 
> [<ipython-input-1-4c4e816c817e>](https://localhost:8080/#) in _plot_pdb(self, change)
>     405       else:
>     406         pdb = f"outputs/{self.path}_0.pdb"
> --> 407         pdb_str = open(pdb,'r').read()
>     408         view.addModel(pdb_str,'pdb')
>     409       if self._plot["color"] == "SSE":
> 
> FileNotFoundError: [Errno 2] No such file or directory: 'outputs/test_0.pdb'