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sokrypton / ColabFold

Making Protein folding accessible to all!
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AlphaFold2_advanced: New/recent IndexError upon running 'run Alphafold' #24

Closed jenchem closed 3 years ago

jenchem commented 3 years ago

I have been playing with the new AlphaFold2_advanced rollout and have gotten through the whole pipeline for several heterologous protein-protein interactions. Suddenly this afternoon I am receiving this error but I don't know where at in the code the problem could be coming from or why it has suddenly changed. I have been keeping all of my parameters the same and only changing the second amino-acid sequence in the sequence input.

image
jenchem commented 3 years ago

I have been playing with the new AlphaFold2_advanced rollout and have gotten through the whole pipeline for several heterologous protein-protein interactions. Suddenly this afternoon I am receiving this error but I don't know where at in the code the problem could be coming from or why it has suddenly changed. I have been keeping all of my parameters the same and only changing the second amino-acid sequence in the sequence input.

image

Sorry, forgot to expand the log before screenshooting:

image
jenchem commented 3 years ago

I just saw that there is a pending fix for a matrix error- that might be what's going on for me so I will just be patient.

sokrypton commented 3 years ago

we fixed this a couple hours ago. Can you try refresh and/or open a fresh new notebook?

jenchem commented 3 years ago

After closing my session and closing my tab and logging out and in again from my Google account I was able to get it to work. Thank you!

Jennifer Madrigal

From: Sergey O @.> Reply-To: sokrypton/ColabFold @.> Date: Wednesday, August 18, 2021 at 4:57 PM To: sokrypton/ColabFold @.> Cc: Jennifer Madrigal @.>, Author @.***> Subject: Re: [sokrypton/ColabFold] AlphaFold2_advanced: New/recent IndexError upon running 'run Alphafold' (#24)

we fixed this a couple hours ago. Can you try refresh and/or open a fresh new notebook?

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